BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0574600 Os02g0574600|AK059246
         (310 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0574600  Conserved hypothetical protein                      560   e-160
Os04g0455600  Conserved hypothetical protein                      453   e-128
Os07g0623600  Conserved hypothetical protein                      255   3e-68
Os03g0387800  Conserved hypothetical protein                      234   6e-62

>Os02g0574600 Conserved hypothetical protein
          Length = 310

 Score =  560 bits (1442), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/310 (91%), Positives = 284/310 (91%)

Query: 1   MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
           MERAVPVRKTHASTAGLLSWSE                          GGITPAMFGAPV
Sbjct: 1   MERAVPVRKTHASTAGLLSWSESPGPDNAAAAAGAAAPPSSRPSLKPAGGITPAMFGAPV 60

Query: 61  TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120
           TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT
Sbjct: 61  TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120

Query: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180
           GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF
Sbjct: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180

Query: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKTAK 240
           GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKTAK
Sbjct: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKTAK 240

Query: 241 KIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGVRKP 300
           KIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGVRKP
Sbjct: 241 KIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGVRKP 300

Query: 301 PGGGSSIALV 310
           PGGGSSIALV
Sbjct: 301 PGGGSSIALV 310



>Os04g0455600 Conserved hypothetical protein
          Length = 305

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/312 (74%), Positives = 255/312 (81%), Gaps = 9/312 (2%)

Query: 1   MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
           MERAVPVRK H STA LL+WS                           GGITPAMFGAPV
Sbjct: 1   MERAVPVRKPHTSTADLLTWS---ATGPDAAAAAASPVASSRPSLKPAGGITPAMFGAPV 57

Query: 61  TDLEAEDLTK--RKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQT 118
           ++ EAEDL+K  RK CSGSK+KEMTGSGIF+    N DSE     SNP +KTS+RMYQQT
Sbjct: 58  SEKEAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEA----SNPANKTSVRMYQQT 113

Query: 119 VTGISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSD 178
           VTGISQISFSA+GSVSPKKPSSLPEVAKQRELSGTLE++A+AK+ KQ+SEAKSKELSGSD
Sbjct: 114 VTGISQISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSD 173

Query: 179 IFGPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKT 238
           IFGPPPEIP+RPLAARN+ELQGNLDFALPQPRS+HTSVKVSNPAGGPSNI F EEP VKT
Sbjct: 174 IFGPPPEIPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKT 233

Query: 239 AKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGVR 298
           +KKIHNQKF ELTGNNIFKE+A P SAEKSLS+AKLKEMSGS+IFADG  A RDY GGVR
Sbjct: 234 SKKIHNQKFQELTGNNIFKEDATPASAEKSLSSAKLKEMSGSDIFADGAAAPRDYLGGVR 293

Query: 299 KPPGGGSSIALV 310
           KPPGG SSIAL+
Sbjct: 294 KPPGGESSIALI 305



>Os07g0623600 Conserved hypothetical protein
          Length = 288

 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 190/315 (60%), Gaps = 32/315 (10%)

Query: 1   MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
           MER  PVRK+H STA LL+W E                            I+  +FG  V
Sbjct: 1   MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSE----AISKVVFGGQV 56

Query: 61  TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120
           T+ E E L KRK CS  K KEMTGSGIF+A+G   + E+ +  + P  +T  + YQ  ++
Sbjct: 57  TEEEFESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATP-VRTVSKNYQ-AIS 114

Query: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180
            IS ISF+ E SVSPKKP+S+ EVAKQRELSGTL+SE ++K+K+Q S AKSKELSG DIF
Sbjct: 115 TISHISFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIF 174

Query: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGP--SNIMFGE---EPA 235
            PP +                     P+PR+         P      S I FGE   +  
Sbjct: 175 APPED---------------------PRPRNSANGSTSQTPGKNAQVSTITFGEADTDSV 213

Query: 236 VKTAKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFG 295
           VKTAKKI  +K  +LTGN+IFK +A PG+AEK LSTAKLKEM+GS+IFADGK  SRDY G
Sbjct: 214 VKTAKKIPEKKLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLG 273

Query: 296 GVRKPPGGGSSIALV 310
           G+RKPPGG SSIALV
Sbjct: 274 GIRKPPGGESSIALV 288



>Os03g0387800 Conserved hypothetical protein
          Length = 290

 Score =  234 bits (597), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 156/313 (49%), Positives = 188/313 (60%), Gaps = 26/313 (8%)

Query: 1   MERAVPVRKTHASTAGLLSWSEXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPAMFGAPV 60
           MER  PVRK+H STA LL+W +                            +   +FG  V
Sbjct: 1   MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSE---ALRKVVFGGQV 57

Query: 61  TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120
           T+ EAE L KRK CS  K KEMTGSGIF+A GA+G++E     + P          Q VT
Sbjct: 58  TEEEAESLNKRKPCSAPKWKEMTGSGIFAA-GADGEAEEPGSAAAPGRAAPRNY--QPVT 114

Query: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180
            +S ISF+ +GSV PKKP+S+ EVAKQRELSGTL+SEAD+K+KKQ S AKSKELSG  +F
Sbjct: 115 -VSHISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLF 173

Query: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGE---EPAVK 237
            P      RP  ARN     N   A       HT V+ +N     S+  FGE   +   K
Sbjct: 174 DP---QDVRPNGARNT---ANGTGA------SHTPVRNANV----SSFSFGEANTDSVTK 217

Query: 238 TAKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGV 297
           TAKKI  +KF +LTGNNIFK +  P SAEK LSTAKLKEM+GSNIFA+G+  +R+Y  G 
Sbjct: 218 TAKKITGKKFTDLTGNNIFKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGN 277

Query: 298 RKPPGGGSSIALV 310
           RKPPGG SSIALV
Sbjct: 278 RKPPGGESSIALV 290



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.126    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,287,446
Number of extensions: 480033
Number of successful extensions: 1403
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 4
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 156 (64.7 bits)