BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0550100 Os02g0550100|AK099459
(167 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteo... 235 1e-62
Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteo... 229 6e-61
Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteo... 225 1e-59
Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteo... 225 1e-59
Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteo... 203 4e-53
>Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 167
Score = 235 bits (599), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/167 (76%), Positives = 127/167 (76%)
Query: 1 MAGASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVP 60
MAGASTFSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVP
Sbjct: 1 MAGASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVP 60
Query: 61 VVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGD 120
VVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAH MAIGIVGD
Sbjct: 61 VVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGD 120
Query: 121 AGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
AGVRANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 121 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 167
>Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 166
Score = 229 bits (585), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 124/164 (75%)
Query: 4 ASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
+STFSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
Query: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 123
AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAH MAIGIVGDAGV
Sbjct: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 122
Query: 124 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 123 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 166
>Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/164 (73%), Positives = 123/164 (75%)
Query: 4 ASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
+S FSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 2 SSVFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
Query: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 123
AGVLGIYGLIIAVIISTGINPKAKPY+LFDGYAH MAIGIVGDAGV
Sbjct: 62 AGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 121
Query: 124 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 122 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/164 (73%), Positives = 123/164 (75%)
Query: 4 ASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
+S FSGDETAP SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
Query: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 123
AGVLGIYGLIIAVIISTGINPKAKPY+LFDGYAH MAIGIVGDAGV
Sbjct: 62 AGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 121
Query: 124 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 122 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 116/164 (70%)
Query: 4 ASTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
+STF+GDE AP SCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVM
Sbjct: 2 SSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVM 61
Query: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 123
AGVLGIYGLIIAVII+TGINP A PY+ FDG H +AIG+VGDAGV
Sbjct: 62 AGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAGV 121
Query: 124 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 167
RANAQQPKLFVGM YGLIVGIILSSRAGQSRA
Sbjct: 122 RANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSRAGQSRAH 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,669,371
Number of extensions: 107453
Number of successful extensions: 181
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 6
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)