BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0497700 Os02g0497700|AK104815
(169 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK066155 210 3e-55
Os02g0497700 Similar to Ras-GTPase-activating protein SH3-d... 206 6e-54
Os04g0372800 Nuclear transport factor 2 domain containing p... 140 5e-34
Os03g0418800 Nuclear transport factor 2 domain containing p... 106 7e-24
Os07g0603100 Nuclear transport factor 2 domain containing p... 94 4e-20
AK103571 85 3e-17
>AK066155
Length = 522
Score = 210 bits (535), Expect = 3e-55, Method: Composition-based stats.
Identities = 107/153 (69%), Positives = 107/153 (69%)
Query: 1 EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ 60
EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ
Sbjct: 354 EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ 413
Query: 61 SAIEASPVMIGGRQCFVEEKRTPXXXXXXXXXXFAPGRGNNNFRADXXXXXXXXXXXXXX 120
SAIEASPVMIGGRQCFVEEKRTP FAPGRGNNNFRAD
Sbjct: 414 SAIEASPVMIGGRQCFVEEKRTPGSRGSSRGGRFAPGRGNNNFRADGMRGRGNYSGGRSY 473
Query: 121 XXXXXXXXXDYXXXXXXXXXXXXXPDVGYQRVD 153
DY PDVGYQRVD
Sbjct: 474 GRGDFSYRSDYGGRGGGRGDSARGPDVGYQRVD 506
>Os02g0497700 Similar to Ras-GTPase-activating protein SH3-domain binding
protein-like
Length = 169
Score = 206 bits (524), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 107/153 (69%)
Query: 1 EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ 60
EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ
Sbjct: 1 EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ 60
Query: 61 SAIEASPVMIGGRQCFVEEKRTPXXXXXXXXXXFAPGRGNNNFRADXXXXXXXXXXXXXX 120
SAIEASPVMIGGRQCFVEEKRTP FAPGRGNNNFRAD
Sbjct: 61 SAIEASPVMIGGRQCFVEEKRTPGSRGSSRGGRFAPGRGNNNFRADGMRGRGNYSGGRSY 120
Query: 121 XXXXXXXXXDYXXXXXXXXXXXXXPDVGYQRVD 153
DY PDVGYQRVD
Sbjct: 121 GRGDFSYRSDYGGRGGGRGGSARGPDVGYQRVD 153
>Os04g0372800 Nuclear transport factor 2 domain containing protein
Length = 486
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 1 EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ 60
EVDAHAIYVR+LPL+AT QLE+ FKKFG IKPDGIQVRSHKIQGFCYGFVEFE+ ++VQ
Sbjct: 318 EVDAHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDPSSVQ 377
Query: 61 SAIEASPVMIGGRQCFVEEKRTPXXXXXXXXXXFAPGRGNNNFRADXXXXXXXXXXXXXX 120
SAI SPV I RQC+VEEKRT NFR +
Sbjct: 378 SAIAGSPVTISDRQCYVEEKRTAGSRGGGRGRFAP--GRGGNFRGEGMRGRGNYTGGRGY 435
Query: 121 XXXXXXXXXDYXXXXXXXXXXXXXPDVGYQRVD 153
DY DVGYQRVD
Sbjct: 436 GRGEFNYRSDYGGRGAGRGGSSRGGDVGYQRVD 468
>Os03g0418800 Nuclear transport factor 2 domain containing protein
Length = 488
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 64/79 (81%)
Query: 4 AHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQSAI 63
++++V+SLP N T +E+EFKKFG IKP GIQVR++KI FC+GF+EFE ++Q+AI
Sbjct: 299 GYSVFVKSLPHNVTVQTVEEEFKKFGAIKPGGIQVRNNKIDRFCFGFIEFESQQSMQAAI 358
Query: 64 EASPVMIGGRQCFVEEKRT 82
EASP+ +GG++ FVEEKRT
Sbjct: 359 EASPIHMGGKEVFVEEKRT 377
>Os07g0603100 Nuclear transport factor 2 domain containing protein
Length = 569
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 4 AHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQSAI 63
+++YV+ LP TT +E++F+KFG I+P GIQVR + GFC+GFVEFE ++ +AI
Sbjct: 318 GYSVYVKHLPYECTTKDVEEKFRKFGAIRPGGIQVRHRQPDGFCFGFVEFESRQSMLAAI 377
Query: 64 EASPVMIGGRQCFVEEKRT 82
EASPV IG + VEEKRT
Sbjct: 378 EASPVSIGSKASIVEEKRT 396
>AK103571
Length = 448
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 57/79 (72%)
Query: 3 DAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQSA 62
++ ++YV ++P + + LE+EFKKFG + PDG+ +RS K G Y FVEFEE + V +A
Sbjct: 307 ESKSVYVGNVPSSVSEADLENEFKKFGRLIPDGVAIRSRKETGGYYAFVEFEELSGVHNA 366
Query: 63 IEASPVMIGGRQCFVEEKR 81
++ASP+ I GRQ +VEE++
Sbjct: 367 LKASPIEINGRQIYVEERK 385
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,444,020
Number of extensions: 104595
Number of successful extensions: 322
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 6
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)