BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0460200 Os02g0460200|AK065150
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0460200 Conserved hypothetical protein 176 3e-45
Os04g0282400 Similar to FPF1 protein-like (RAA1) 133 3e-32
Os01g0257300 Conserved hypothetical protein 104 2e-23
Os01g0933500 Conserved hypothetical protein 93 5e-20
Os07g0671000 Conserved hypothetical protein 70 4e-13
>Os02g0460200 Conserved hypothetical protein
Length = 122
Score = 176 bits (447), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 91/122 (74%)
Query: 1 MAGVWVFKDGIVRRVENPXXXXXXXXXXXXXXXRRKVLVHVPSGEVVASYXXXXXXXXXX 60
MAGVWVFKDGIVRRVENP RRKVLVHVPSGEVVASY
Sbjct: 1 MAGVWVFKDGIVRRVENPGSEESSSAGDGGGGGRRKVLVHVPSGEVVASYEVLERRLREL 60
Query: 61 XXXXXXTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRDAAAPAVSP 120
TDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRDAAAPAVSP
Sbjct: 61 GWERYLTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRDAAAPAVSP 120
Query: 121 AT 122
AT
Sbjct: 121 AT 122
>Os04g0282400 Similar to FPF1 protein-like (RAA1)
Length = 118
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 1 MAGVWVFKDGIVRRVENPXXXXXXXXXXXXXXXRRKVLVHVPSGEVVASYXXXXXXXXXX 60
MAGVWVF+DG+VRR ++ KVLVHVPS EVV SY
Sbjct: 1 MAGVWVFEDGMVRRADSEAPSRGRGVGGGGGGG--KVLVHVPSSEVVTSYEVLERRLREL 58
Query: 61 XXXXXXTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRDAAAPAVSP 120
DPCLLQFHQRSTVHLISVPRDFS+ KLVHMYD+VVKTRNVFEVRDAA A P
Sbjct: 59 GWERYLNDPCLLQFHQRSTVHLISVPRDFSRLKLVHMYDVVVKTRNVFEVRDAATTASPP 118
>Os01g0257300 Conserved hypothetical protein
Length = 109
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 1 MAGVWVFKDGIVRRVENPXXXXXXXXXXXXXXXRRKVLVHVPSGEVVASYXXXXXXXXXX 60
M+GVWVFK+G+VR VE RRK LVH PSG+VV+SY
Sbjct: 1 MSGVWVFKNGVVRLVEKQQATAGTAVAGG----RRKALVHTPSGQVVSSYAALEARLTAL 56
Query: 61 XXXXXXTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRDA 113
DP L QFH+R ++ LIS+P DFS F VHMYDIVVK R+ F V DA
Sbjct: 57 GWERYYEDPSLFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRDSFRVVDA 109
>Os01g0933500 Conserved hypothetical protein
Length = 127
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 68/126 (53%), Gaps = 14/126 (11%)
Query: 1 MAGVWVFKDGIVRRVENPXXXXXXXXXXXXXXX------RRKVLVHVPSGEVVASYXXXX 54
M+GVWVF++G+V+ VENP RRK L+H+P+GEVV SY
Sbjct: 1 MSGVWVFRNGVVKLVENPPASANSGGGGGGGGGGGGGGIRRKALLHMPTGEVVTSYASLE 60
Query: 55 XXXXXXXXXXXXTDP--------CLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRN 106
+ +LQFH+RS+V LIS+P+DFS+F VHMYDIVVK R+
Sbjct: 61 RKLAALGWERYYSGGGGAAAAAAMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
Query: 107 VFEVRD 112
F V D
Sbjct: 121 AFRVID 126
>Os07g0671000 Conserved hypothetical protein
Length = 105
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 2 AGVWVFKDGIVRRVENPXXXXXXXXXXXXXXXRRKVLVHVPSGEVVASYXXXXXXXXXXX 61
GVWVF++ V +E RK LVHV + EV+ S
Sbjct: 4 GGVWVFRNNGVMELEEQATS-------------RKALVHVATSEVIRSTEALERRLGALG 50
Query: 62 XXXXXTDPCLLQFHQR-STVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRD 112
D LQ H+R + LIS+PRDFS+F+ HMYD+VVK R+ F+V D
Sbjct: 51 WERYYEDRATLQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFKVVD 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,056,114
Number of extensions: 80217
Number of successful extensions: 97
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 5
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)