BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0319800 Os02g0319800|AK111750
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0319800 WD40-like domain containing protein 778 0.0
Os03g0397500 Pyruvate kinase family protein 161 1e-39
Os07g0572000 WD40-like domain containing protein 83 5e-16
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 79 5e-15
>Os02g0319800 WD40-like domain containing protein
Length = 451
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/451 (85%), Positives = 386/451 (85%)
Query: 1 MDLLSAAYGATSDDDDDGAEATPTPGWAATGYASAAGXXXXXXXXXXXXXXXXXXXXXXX 60
MDLLSAAYGATSDDDDDGAEATPTPGWAATGYASAAG
Sbjct: 1 MDLLSAAYGATSDDDDDGAEATPTPGWAATGYASAAGPPPKRPRWEPPPYLPPPPPYPIP 60
Query: 61 XXXXXXXXXXXXSTASGRYVSKRERALMXXXXXXXXXXXXXXXXXXXQFGSPVVGSISDS 120
STASGRYVSKRERALM QFGSPVVGSISDS
Sbjct: 61 QPARPRAAPPPASTASGRYVSKRERALMAASSSPVDSSSPLPPSAAAQFGSPVVGSISDS 120
Query: 121 NLRADIFHSLRCQTKPGSTRRMPLKLSVSLTGHTKAVNCVDWSQSHAHLLASAGMDHTIH 180
NLRADIFHSLRCQTKPGSTRRMPLKLSVSLTGHTKAVNCVDWSQSHAHLLASAGMDHTIH
Sbjct: 121 NLRADIFHSLRCQTKPGSTRRMPLKLSVSLTGHTKAVNCVDWSQSHAHLLASAGMDHTIH 180
Query: 181 VFNVWNKGNTTARVFKFHTAAVKDVRWXXXXXXXXXXXFDCSLRLVDVEEGKEIKVFKED 240
VFNVWNKGNTTARVFKFHTAAVKDVRW FDCSLRLVDVEEGKEIKVFKED
Sbjct: 181 VFNVWNKGNTTARVFKFHTAAVKDVRWSLNGLSLLSGGFDCSLRLVDVEEGKEIKVFKED 240
Query: 241 QAVEVIKFNPSNSNLFLSGGSKGSLRLWDIRSGLVTKEYQRNLGTILDIEFSSDGKQFIC 300
QAVEVIKFNPSNSNLFLSGGSKGSLRLWDIRSGLVTKEYQRNLGTILDIEFSSDGKQFIC
Sbjct: 241 QAVEVIKFNPSNSNLFLSGGSKGSLRLWDIRSGLVTKEYQRNLGTILDIEFSSDGKQFIC 300
Query: 301 STDTSRSNVSENSIIIWDTLRQVPLSNQVYTEAYTCPCVRYHPFEASFVAQSNGNYIAIF 360
STDTSRSNVSENSIIIWDTLRQVPLSNQVYTEAYTCPCVRYHPFEASFVAQSNGNYIAIF
Sbjct: 301 STDTSRSNVSENSIIIWDTLRQVPLSNQVYTEAYTCPCVRYHPFEASFVAQSNGNYIAIF 360
Query: 361 SAKSPFKLNKYMRYEGHGVWGFPIKCNFSFSGKELTSGSSDGCIYFYDYKSSRLLSKIQA 420
SAKSPFKLNKYMRYEGHGVWGFPIKCNFSFSGKELTSGSSDGCIYFYDYKSSRLLSKIQA
Sbjct: 361 SAKSPFKLNKYMRYEGHGVWGFPIKCNFSFSGKELTSGSSDGCIYFYDYKSSRLLSKIQA 420
Query: 421 FKEPCTDVAYHPVIPNVIASCSWAGEIAVFE 451
FKEPCTDVAYHPVIPNVIASCSWAGEIAVFE
Sbjct: 421 FKEPCTDVAYHPVIPNVIASCSWAGEIAVFE 451
>Os03g0397500 Pyruvate kinase family protein
Length = 573
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 157/312 (50%), Gaps = 10/312 (3%)
Query: 142 MPLKLSVSLTGHTKAVNCVDWSQSHAHLLASAGMDHTIHVFNVWNKGNTTARVFKFHTAA 201
+P + GHTK V+ + + + HLL SA MD I +++V + T R + H+ A
Sbjct: 270 IPKRCVHEWVGHTKGVSAIRFFPKYGHLLLSASMDCKIKIWDVL-ESRTCMRTYMGHSKA 328
Query: 202 VKDVRWXXXXXXXXXXXFDCSLRLVDVEEGKEIKVFKEDQAVEVIKFNPSN--SNLFLSG 259
V+D+ + +D +++ D E G+ I F + V+K NP ++ L+G
Sbjct: 329 VRDISFSNDGTKFLSAGYDRNIQYWDTETGQVISTFSTGKVPYVVKLNPDEDKQHVLLAG 388
Query: 260 GSKGSLRLWDIRSGLVTKEYQRNLGTILDIEFSSDGKQFICSTDTSRSNVSENSIIIWDT 319
S + WD++SG +T+EY ++LG + I F + ++F+ S+D + S+ +W+
Sbjct: 389 MSDKKIVQWDMKSGQITQEYDQHLGAVNTITFVDNNRRFVTSSD-------DKSLRVWEF 441
Query: 320 LRQVPLSNQVYTEAYTCPCVRYHPFEASFVAQSNGNYIAIFSAKSPFKLNKYMRYEGHGV 379
V + ++ P + HP AQS N I I+S K F+LNK R+ GH V
Sbjct: 442 GIPVVIKYISEPHMHSMPSISLHPNSNWLAAQSLDNQILIYSTKERFQLNKKKRFAGHIV 501
Query: 380 WGFPIKCNFSFSGKELTSGSSDGCIYFYDYKSSRLLSKIQAFKEPCTDVAYHPVIPNVIA 439
G+ + NFS G+ + SG +G +F+D+KS R ++ C +HP+ + +A
Sbjct: 502 AGYACQVNFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLKCHNGVCIGCEWHPLETSKVA 561
Query: 440 SCSWAGEIAVFE 451
+C W G I ++
Sbjct: 562 TCGWDGVIKYWD 573
>Os07g0572000 WD40-like domain containing protein
Length = 338
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 52/339 (15%)
Query: 133 QTKPGSTRRMPLKLSVSLTGHTKAVNCVDWSQSHAHLLASAGMDHTIHVFNVWNKGNTTA 192
Q P R P + + T H++AV+CV +S LLA+A +D T+ + + +
Sbjct: 5 QQAPAPPYR-PYRQVRAATPHSRAVSCVRFSPC-GRLLATASLDGTVALLSPSSLAAIA- 61
Query: 193 RVFKFHTAAVKDVRWXXXXXXXXXXXFDCSLRLVDVEE--------------GKEIKVFK 238
+ H V D+ W D +LR+ DV G +
Sbjct: 62 -TLRGHADGVSDISWSTDSFYLCSASDDRTLRIWDVRPVLAGLNPGSGGGGGGAQPADPN 120
Query: 239 EDQAVEVIK----------FNPSNSNLFLSGGSKGSLRLWDIRSGLVTKEYQRNLGTILD 288
D+ + V+K FNP ++ SGG ++R+WD++SG + + +
Sbjct: 121 ADRCIRVLKGHTNFVFSANFNPQTNSTVASGGFDCTVRIWDVKSGRCVRAIDAHSEPVTS 180
Query: 289 IEFSSDGKQFICSTDTSRSNVSENSIIIWDTLRQVPLSNQVYTEAYTCPCVRYHPFEASF 348
+ F DG + S + + IWD L + + P V + F
Sbjct: 181 VHFIRDGSIIV-------SGSHDGTCKIWDAGTGSCLKTVIDEKK---PAVSFSMFSP-- 228
Query: 349 VAQSNGNYIAIFSAKSPFKL-----NKYMR-YEGHGVWGFPIKCNFSFS-GKELTSGSSD 401
NG +I + + KL K+++ Y GH + ++ FS + GK + SGS D
Sbjct: 229 ----NGKFILVAALDDTLKLCNFASGKFLKMYSGHVNRKYCLQSAFSVTNGKYIVSGSED 284
Query: 402 GCIYFYDYKSSRLLSKIQAFKEPCTDVAYHPVIPNVIAS 440
C+Y +D + +L K++ + V+ HP N IAS
Sbjct: 285 NCVYIWDLQGKNILQKLEGHTDTVISVSCHPT-ENKIAS 322
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 41/323 (12%)
Query: 146 LSVSLTGHTKAVNCVDWSQSHAHLLASAGMDHTIHVFNVWNKGNTTARVFKF--HTAAVK 203
L +L GH +AV+ V +S LLASA D + VW+ + + V + H V
Sbjct: 11 LRATLAGHRRAVSAVKFSPD-GRLLASASADK---LLRVWSTSDLASPVAELAGHGEGVS 66
Query: 204 DVRWXXXXXXXXXXXFDCSLRLVDVEEGKEIKVFKEDQAVEVIK----------FNPSNS 253
D+ + D ++R+ D+ +G E + ++ + F+P +
Sbjct: 67 DLAFSPDGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLAFSP-HG 125
Query: 254 NLFLSGGSKGSLRLWDIRSGLVTKEYQRNLGTILDIEFSSDGKQFICSTDTSRSNVSENS 313
N+ SG ++R+W++RSG + + + ++F+ DG + S +
Sbjct: 126 NMLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDGAMIV-------SGSYDGL 178
Query: 314 IIIWDTLRQVPLSNQVYTEAYTCPCVRYHPFEASFVAQSNGNYIAIFSAKSPFKL----- 368
IWD+ + + E+ ++ P NG ++ + S +L
Sbjct: 179 CRIWDSATGHCIKTLIDDESPPVSFAKFSP---------NGKFVLAATLDSKLRLWNFSA 229
Query: 369 NKYMR-YEGHGVWGFPIKCNFSFS-GKELTSGSSDGCIYFYDYKSSRLLSKIQAFKEPCT 426
K+++ Y GH + I FS + GK + SGS D C+Y +D +S ++L K++ +
Sbjct: 230 GKFLKTYTGHVNTKYCIPAAFSITNGKYIVSGSEDKCVYIWDLQSRKILQKLEGHTDTVI 289
Query: 427 DVAYHPVIPNVIASCSWAGEIAV 449
V+ HP N+IAS G+ V
Sbjct: 290 AVSCHPN-ENMIASGGLDGDKTV 311
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,408,810
Number of extensions: 478106
Number of successful extensions: 1879
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1864
Number of HSP's successfully gapped: 4
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)