Os03g0397500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyruvate kinase family protein.
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Os03g0397500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyruvate kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.01 | 0.199 | 10.2 | 1.04 | 0.43 | 0.634 | 0.215 | -0.0516 | 0.181 | 12.4 | 0.4402 | 1396 | -- | -- |
| 17.97 | 0.197 | 10.2 | 1.04 | 0.43 | 0.649 | 0.217 | -- | 0.182 | 12.5 | 0.4643 | 1382 | -- | -- |
| 18.13 | 0.198 | 10.2 | 1.02 | 0.41 | 0.694 | -- | 0.19 | 0.169 | 12.4 | 0.4627 | 1381 | -- | -- |
| 18.15 | 0.198 | 10.2 | 1.02 | 0.408 | 0.654 | -- | -- | 0.165 | 12.5 | 0.48 | 1375 | -- | -- |
| 23.03 | 0.223 | 10.2 | 1.02 | -- | 1.1 | -- | 0.47 | 0.167 | -- | 0.5301 | 1289 | -- | -- |
| 22.57 | 0.223 | 10.2 | 0.87 | 0.495 | -- | 0.263 | -- | 0.104 | 12.3 | -- | -- | -- | -- |
| 22.86 | 0.224 | 10.2 | 0.88 | 0.494 | -- | -- | -- | 0.105 | 12.2 | -- | -- | -- | -- |
| 23.26 | 0.225 | 10.2 | 1.05 | -- | 1.03 | -- | -- | 0.185 | -- | 0.6213 | 1283 | -- | -- |
| 42.67 | 0.306 | 10.2 | -- | 0.294 | -0.163 | -- | -- | 0.00442 | 12.4 | 0.48 | 1375 | -- | -- |
| 38.22 | 0.289 | 10.2 | 0.864 | -- | -- | -- | -- | 0.0975 | -- | -- | -- | -- | -- |
| 43.28 | 0.308 | 10.2 | -- | 0.482 | -- | -- | -- | 0.00692 | 12.1 | -- | -- | -- | -- |
| 43.97 | 0.31 | 10.2 | -- | -- | -0.357 | -- | -- | 0.000165 | -- | 0.6213 | 1283 | -- | -- |
| 57.91 | 0.355 | 10.2 | -- | -- | -- | -- | -- | 0.00165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 3 | 17.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 4 | 17.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 5 | 17.45 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 19 | 17.57 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 33 | 17.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 35 | 17.75 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 43 | 17.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 45 | 17.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 58 | 17.87 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 78 | 17.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 80 | 17.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 87 | 17.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 16 |
| 93 | 17.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 106 | 17.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 134 | 17.91 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 135 | 17.91 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 165 | 17.95 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 166 | 17.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 167 | 17.96 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 197 | 18.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 209 | 18.01 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 250 | 18.05 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 252 | 18.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 271 | 18.06 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 293 | 18.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 317 | 18.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 395 | 18.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 493 | 18.29 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 562 | 18.31 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 576 | 18.32 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 21 |
| 578 | 18.32 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 589 | 18.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 590 | 18.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 636 | 18.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 688 | 18.42 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 692 | 18.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 697 | 18.43 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 701 | 18.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 710 | 18.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 715 | 18.44 | radiation | 20 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 746 | 18.45 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 747 | 18.45 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 748 | 18.45 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 750 | 18.45 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 754 | 18.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 18 |
| 755 | 18.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 777 | 18.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 779 | 18.47 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 780 | 18.47 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 786 | 18.47 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 794 | 18.47 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 828 | 18.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 853 | 18.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 856 | 18.49 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 863 | 18.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 894 | 18.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 926 | 18.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 929 | 18.51 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 934 | 18.52 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 1 |
| 962 | 18.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 963 | 18.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 964 | 18.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 990 | 18.54 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |