BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0296300 Os02g0296300|Os02g0296300
(456 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0296300 Conserved hypothetical protein 856 0.0
Os02g0294100 Cyclin-like F-box domain containing protein 160 2e-39
Os02g0288925 134 1e-31
Os02g0288000 Cyclin-like F-box domain containing protein 125 7e-29
Os02g0287900 Curculin-like (mannose-binding) lectin domain ... 95 1e-19
Os04g0349550 91 2e-18
Os04g0324600 86 5e-17
Os04g0313500 Cyclin-like F-box domain containing protein 82 1e-15
>Os02g0296300 Conserved hypothetical protein
Length = 456
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/456 (93%), Positives = 426/456 (93%)
Query: 1 MAVGELGDGAASEGMARLSLSXXXXXXXXXXXXXXXSSVFDNDDLLREILVRVALPHCLV 60
MAVGELGDGAASEGMARLSLS SSVFDNDDLLREILVRVALPHCLV
Sbjct: 1 MAVGELGDGAASEGMARLSLSATVTAMAATATATATSSVFDNDDLLREILVRVALPHCLV 60
Query: 61 RASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSSVLSCPRFVALQGHPPELGVLLG 120
RASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSSVLSCPRFVALQGHPPELGVLLG
Sbjct: 61 RASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSSVLSCPRFVALQGHPPELGVLLG 120
Query: 121 RASRHFDAWSDVPLSMWDSRNGRVLVEIYGKLAVHSPLLPPADISVYPQTPLKVWLDRSF 180
RASRHFDAWSDVPLSMWDSRNGRVLVEIYGKLAVHSPLLPPADISVYPQTPLKVWLDRSF
Sbjct: 121 RASRHFDAWSDVPLSMWDSRNGRVLVEIYGKLAVHSPLLPPADISVYPQTPLKVWLDRSF 180
Query: 181 TYNLHEFLPEDGGNGREYYRLALGYKCKCMIAYLFHLVDGIWVGRASDTISFPGPDEQAE 240
TYNLHEFLPEDGGNGREYYRLALGYKCKCMIAYLFHLVDGIWVGRASDTISFPGPDEQAE
Sbjct: 181 TYNLHEFLPEDGGNGREYYRLALGYKCKCMIAYLFHLVDGIWVGRASDTISFPGPDEQAE 240
Query: 241 LVIPLGVHAFGKLFLLTNFSIIIVLDCKTLELTKVNITXXXXXXXXXXXXXXXGKLEDEF 300
LVIPLGVHAFGKLFLLTNFSIIIVLDCKTLELTKVNIT GKLEDEF
Sbjct: 241 LVIPLGVHAFGKLFLLTNFSIIIVLDCKTLELTKVNITDEIELEDCDEVDLCEGKLEDEF 300
Query: 301 TLVCLHPTKLQVWTHNLSQITWTLSHSVARDDILQASVTEAGESCAHVSILGIANAGKSA 360
TLVCLHPTKLQVWTHNLSQITWTLSHSVARDDILQASVTEAGESCAHVSILGIANAGKSA
Sbjct: 301 TLVCLHPTKLQVWTHNLSQITWTLSHSVARDDILQASVTEAGESCAHVSILGIANAGKSA 360
Query: 361 FLKLDDSIFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFPAHLTGLCTLVYLVD 420
FLKLDDSIFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFPAHLTGLCTLVYLVD
Sbjct: 361 FLKLDDSIFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFPAHLTGLCTLVYLVD 420
Query: 421 NQFLLERGMKILGGKCVLRTSDLSRALHSLSLEGTL 456
NQFLLERGMKILGGKCVLRTSDLSRALHSLSLEGTL
Sbjct: 421 NQFLLERGMKILGGKCVLRTSDLSRALHSLSLEGTL 456
>Os02g0294100 Cyclin-like F-box domain containing protein
Length = 423
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 190/400 (47%), Gaps = 44/400 (11%)
Query: 39 VFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSS 98
V D+ DLLREIL+R+A P LVRA+LVC+ WLR+ASD FLRRF LHPP LGFY+DS+
Sbjct: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
Query: 99 VLSCPRFVALQGHPPELGVLLGRASRHFDAWSDVPL----SMWDSRNGRVLVEIYG---- 150
L PRFV L HPPEL ++ R S +D+ ++ RNGR+LV G
Sbjct: 89 SLPRPRFVPLP-HPPELAAVVRRGSFDLGTAADLHFHLGTGIYCCRNGRLLVCHRGGGES 147
Query: 151 KLAVHSPLLPPAD---ISVYPQTPLKVWLDRSFTYNLHEFLPEDGGNGREYYRLALGYKC 207
L + PL P +D IS + P + ++ T + LP E G
Sbjct: 148 TLQLRRPLHPASDGAVISTFRTPPRPLPPNQRHTRYI--LLP-------EDGGDGDGDAV 198
Query: 208 KCMIAYLFH------------LVDGIW-VGRASDTISFPGPDEQAELVIPLGVHAFGKLF 254
C + L L G+W V + S I P ++ + G GKL+
Sbjct: 199 ACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHWRRS---LSRGFLVNGKLY 255
Query: 255 LLTNFSIIIVLDCKTLELTKVNITXXXXXXXXXXXXXXXGKLEDE---FTLVCLHPTKLQ 311
+L I+ L+ ++ L + + + E L+ + K+
Sbjct: 256 MLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLSVKLSQAEKSGLYLIHVEGFKIH 315
Query: 312 VWTHNL---SQITWTLSHSVARDDILQASVTEAGESC-AHVSILGIANAGKSAFLKLDDS 367
VW H S W L +++ ++ V + ES + +S+ G + + FL++D
Sbjct: 316 VWLHGTDGNSSADWNLVNTICLREVFGHLVKPSWESGDSRISLPGSGDNAEFVFLEVDGE 375
Query: 368 IFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFPA 407
+F +DI+++ + KVYE+ +D + IYP +M+WPP FPA
Sbjct: 376 VFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPA 415
>Os02g0288925
Length = 424
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 175/404 (43%), Gaps = 54/404 (13%)
Query: 41 DNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSSVL 100
+NDDL+ EIL+R+A P LVRA+L C+ WLR ASD FLRRFR LHPP LGFY+ S L
Sbjct: 31 ENDDLVGEILLRLAFPTTLVRAALACRRWLRVASDPSFLRRFRELHPPRLLGFYVTS--L 88
Query: 101 SCPRFVALQGHP-----------PELGVLLGRASRHFDAWSDVPLSMWDSRNGRVLV--E 147
PR HP PEL ++ R A+ S++ RNG +L+ E
Sbjct: 89 KIPR-----AHPLFVPMPPPARPPELDPVVLRGGNFSLAYEGYTTSIYQCRNGSILLFKE 143
Query: 148 IYG----KLAVHSPLLPPAD------ISVYPQTPLKVWLDRSF----TYNLHEFLPEDGG 193
+ K AVH PL P S V D F + H EDGG
Sbjct: 144 RHDRRELKYAVHRPLQHPERGLLAIPFSSTHDDDDDVEPDLGFDDENVWGFH--FGEDGG 201
Query: 194 NGREYYRLALGYKCK-CMIAYLFHLVDGIWVGRASDTISFPG-PDEQAELVIPLGVHAFG 251
+ + YRL++ + + A+ + DG W T PG P E A V+
Sbjct: 202 S--QLYRLSVMFTPRGATSAWFYAFRDGGWHVHTKATAQLPGLPPESAGFVV-----VRD 254
Query: 252 KLFLLTNFSIIIVLDCKTLELTKVNITX------XXXXXXXXXXXXXXGKLEDE--FTLV 303
K +L S ++VLD K+ L + + G+ D+ +
Sbjct: 255 KAYLAATSSSVLVLDLKSSSLYTIQLPDGVEFPPVMMWYNDRSHDVLFGRASDDSGVYIA 314
Query: 304 CLHPTKLQVWTHNLSQITWTLSHSVA-RDDILQASVTEAGESCAHVSILGIANAGKSAFL 362
L +L++W WTL ++ R + G V + + + + FL
Sbjct: 315 DLKEPQLRIWLLKHGSTGWTLVDTICLRSMCANLHINCVGGDSRVVYMDYVGDDAEFLFL 374
Query: 363 KLDDSIFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFP 406
K D+ LD+ ++ + KVYE+ +D + I P +MIWPP FP
Sbjct: 375 KTDECALYLDVKSRQLHKVYEVTEKDEILFSIMPFMMIWPPIFP 418
>Os02g0288000 Cyclin-like F-box domain containing protein
Length = 412
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 166/393 (42%), Gaps = 31/393 (7%)
Query: 37 SSVFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYID 96
SSV NDDLLREIL+R+ LP LVRA+LV WLR ASD FLRRFR+ HPP LGFY
Sbjct: 18 SSVLANDDLLREILLRLGLPTTLVRAALVSTRWLRLASDPAFLRRFRARHPPRLLGFYHT 77
Query: 97 SSVL---SCPRFVALQGHPPELGVLLGRASRHFDAWS-----DVPLSMWDSRNGRVLVEI 148
+ P FV L PPEL L A S D P+ + RNGRVL
Sbjct: 78 ARARFQDEVPAFVPLP-QPPELAAALRGARLRLAPGSSGSGPDAPV-ILSCRNGRVLAAE 135
Query: 149 Y----GKLAVHSPLLPPADISVYPQTPLKVWLDRSFTYNLHE----FLPEDGGNGREYYR 200
+ ++++ SP+ P P PL L R LH P+ G + Y
Sbjct: 136 FPPDGPRVSIISPMHP---ARHPPALPLVYELPRQPGQILHASCMLLFPDVGSDDPSYTF 192
Query: 201 LALGYKCKCMIAYLFHL---VDGIWVGRASDTISFPGPDEQAELVIPLGVHAFGKLFLLT 257
+ K + M+A + + + R S TI E E I V G L+LL
Sbjct: 193 VEFLRKDQEMLAKAVSVRAEISDLNSVRESATIEI---QESWERSIRRDVLVNGNLYLLG 249
Query: 258 NFSIIIVLDCKTLELTKVNITXXXXXXXXXXXXXXXGKLEDEFTLVCLHPTKLQVW---- 313
++ L+ ++ L + + L+ L ++ VW
Sbjct: 250 GKGHVLGLNLASMRLFLFRLPDGVQQLHRMGNIELLRAGDSGLYLIHLKGFQIHVWFRAS 309
Query: 314 THNLSQITWTLSHSVARDDILQASVTEAGESCAHVSILGIANAGKSAFLKLDDSIFLLDI 373
++ W L ++ + ES + L FL++D IF + I
Sbjct: 310 DSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAEVFLRVDRVIFHIHI 369
Query: 374 VAKNMTKVYEICPEDGDIERIYPLLMIWPPKFP 406
+ + + KV+E+ PE I+P +M+WPP FP
Sbjct: 370 MNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFP 402
>Os02g0287900 Curculin-like (mannose-binding) lectin domain containing protein
Length = 422
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 39 VFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSS 98
V +DDLLREIL+R+A P LVRA+LV WL ASD FLRRFR+ +PP LGFY +
Sbjct: 23 VLADDDLLREILLRLAFPTTLVRAALVSSRWLGLASDSSFLRRFRARNPPRLLGFYHTAR 82
Query: 99 VLSCPRFVALQGHPPELGVLLGRASRHFDAWSDVPLSMWDSRNGRVLVEIYG------KL 152
P FV L PPEL +L R +DV ++D RNGR+L + +
Sbjct: 83 RDEQPAFVPLP-QPPELAPVLRRLGGFALGGADVSAVVFDCRNGRLLRAEFPPPPDELRF 141
Query: 153 AVHSPLLPPA 162
V SPLLPPA
Sbjct: 142 GVVSPLLPPA 151
>Os04g0349550
Length = 384
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 153/385 (39%), Gaps = 70/385 (18%)
Query: 37 SSVFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYID 96
S V N DLL+EIL+ + L LV +LVCK WL ++ FL RF
Sbjct: 43 SRVLGNYDLLKEILLSLGLHIPLVHGTLVCKRWLHIIANPEFLGRF-------------- 88
Query: 97 SSVLSCPRFVALQGHPPELGVLLGRASRHFD----AWSDVPLSMWDSRNGRVLVEIYG-- 150
C V QG P E +L RA +F W + D NG+VL+ +
Sbjct: 89 ----GCHMLVPSQGLPTEFVSILSRAKDYFSDLEKNWCSDDFDVLDWCNGQVLISVENSI 144
Query: 151 -----KLAVHSPLLPPADISVYPQTPLKVWLDRSFTYNLHEFLPEDGGNGREYYRLALGY 205
+LA+ +PL P D + P L V P+ GY
Sbjct: 145 MDFQHRLAICTPLNPTKDFTFIPHRQLDV--------------PQ-------------GY 177
Query: 206 KCKCMIAYLFHLVDGIW-VGRASDTISFPGPDEQAELVIPLGVHAFGKLFLLTNFSIIIV 264
K I F+ DG W S I P Q + G+ K ++L I+
Sbjct: 178 -IKMDIYDFFYEKDGAWSYNHISTMIDLPSRWLQRK---NSGLLIDTKFYMLGPSKYILG 233
Query: 265 LDCKTLELTKVNITXXXXXXXXXXXXXXXGKLEDEFTLVCLHPTKLQVWTHNLSQI---- 320
LD ++ L +++ + + + + L+ KL +W H+++
Sbjct: 234 LDLVSMSLFIIDLPNGLEHSNPEMLQLSQEE-DSKLYIFHLNGLKLHIWFHDINNTGNTS 292
Query: 321 TWTLSHSVARDDILQASVTEAGESCAHVSILGIANAGKSAFLKLDDSIFLLDIVAKNMTK 380
W L +++ ++ + +S + I N+G +L +DD ++L+ I + + K
Sbjct: 293 NWVLIDTISFLEVFGHIANPSWDSEVDIKIARGGNSGDFIYLHVDDDVYLVHIKKRMVEK 352
Query: 381 VYEICPEDGDIERIYPLLMIWPPKF 405
V+ ++G + R++P +M WPP F
Sbjct: 353 VF----DNGKVFRVHPFMMAWPPTF 373
>Os04g0324600
Length = 531
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 178/428 (41%), Gaps = 61/428 (14%)
Query: 37 SSVFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYID 96
S+V ++DLL EIL+R+ L+ A++VCK WLR AS +FLRRFR +HPP LGF +D
Sbjct: 21 SAVLSDEDLLGEILLRLESHEHLIAAAIVCKHWLRVASGDLFLRRFRVIHPPRLLGFCVD 80
Query: 97 ---SSVLSCPRFVALQGHPPELGVLLGRASRH--FDAWSDVP----LSMWDSRNGRVLVE 147
V P+F AL HP R +RH F A+ + S+ D R+GR+LVE
Sbjct: 81 DGGGDVGRRPQFKALPQHPGVAAAAAHR-TRHGYFGAFGHLAGYHRPSIADCRDGRLLVE 139
Query: 148 IYG----KLAVHSP-----LLPP-ADISVYPQTPLKVWLDRSFTYNLHE--FLPEDGGNG 195
+L +++P L PP SV PL ++ E FLPEDGG
Sbjct: 140 STDRAPRRLGINTPYRYTVLRPPHPRESVQLLPPLPPPPGGGAGKHVVERVFLPEDGGGA 199
Query: 196 REYYRLALGYK--CKCMIAYLFHLVD--GIWVGRASDTISFPGP--DEQAELVIPLGVHA 249
+ + L Y + + H++D G W + P P D+ E V+P
Sbjct: 200 GGDHGITLVYVLLVERRVTARVHVLDSGGAWGAPTTAETELPAPSCDDAVETVLP---PI 256
Query: 250 FGKLFLLTNFSIIIVLDCKTLELTKVNITXXXXXXXXXXXXXXXGKL-------EDEFTL 302
G+++++T + L T + V + L
Sbjct: 257 NGEVYVVTTSGYTLGLRLGTTRFSVVELPDAARSSANFRMAWSYAAAADDDDFARGRLCL 316
Query: 303 VCLHPTKLQVWTHNLSQ---------ITWTLSHS-VARDDILQASVTEAGESCAHVSILG 352
V T+L +W + + W L+ + R+ + G V+++
Sbjct: 317 VHGDGTRLSIWHRKTTTMEDDGGAAGVGWRLADTFCVREACERVEWLPDGWWTGRVAVIA 376
Query: 353 IANAGKSAFLKLDD--SIFLLDIVAKNMTKVYEICPEDGDIE-----------RIYPLLM 399
+ + + A L L+ + + + + + KVYE D D R++P+
Sbjct: 377 VGDNAEFALLDLEKVGVVIYVHLRWRTVKKVYERKLPDADDGGGGGGDRQRPVRVFPMTT 436
Query: 400 IWPPKFPA 407
+WPP FPA
Sbjct: 437 VWPPTFPA 444
>Os04g0313500 Cyclin-like F-box domain containing protein
Length = 538
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 174/428 (40%), Gaps = 61/428 (14%)
Query: 37 SSVFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYID 96
S+V ++DLL EIL+R+ LV ++VCK WLR AS +FLRRFR +HPP LGF +D
Sbjct: 22 SAVLSDEDLLGEILLRLESHDHLVAVAIVCKHWLRVASGELFLRRFRVIHPPRLLGFCVD 81
Query: 97 SSVLSC----PRFVALQGHPPELGVLLGRAS-RHFDAWSDVP----LSMWDSRNGRVLVE 147
P+F AL HP R R F A+ + S+ D R+GRVLVE
Sbjct: 82 DGGGGDAGRRPQFKALPQHPGVAAAAAHRTRHRFFGAFGHLAGYHRPSIADCRDGRVLVE 141
Query: 148 ----IYGKLAVHSP-----LLPP-ADISVYPQTPLKVWLDRSFTYNLHE--FLPEDGGNG 195
+L +++P L PP SV PL R ++ E FLPEDGG G
Sbjct: 142 SPDRAPRRLGINTPYRYTVLRPPHPRESVQLLPPLPPPPGRGAGKHVVERVFLPEDGGGG 201
Query: 196 REYYRLALGYK--CKCMIAYLFHLVD--GIWVGRASDTISFPGP--DEQAELVIPLGVHA 249
+ + L Y + + H++D G W + P P D+ + V+P
Sbjct: 202 GGDHGITLVYVLLVERRVTARVHVLDSGGAWGAPTTAETELPAPSCDDAVDTVLP---PI 258
Query: 250 FGKLFLLTNFSIIIVLDCKTLELTKVNITXXXXXXXXXXXX--------XXXGKLEDEFT 301
G ++++T + L T T V +
Sbjct: 259 NGDVYVVTTSGYTLGLRLGTTRFTVVELPDAARSSANFRMAWSHAAAAADDDDVARGRLC 318
Query: 302 LVCLHPTKLQVWTHNLSQ---------ITWTLSHS-VARDDILQASVTEAGESCAHVSIL 351
LV T+L VW + + W L+ + R+ + G V+++
Sbjct: 319 LVHGDGTRLSVWHRKTTTTEDDGGAAGVGWRLADTFCVREACERIEWLPDGWWTGRVAVI 378
Query: 352 GIANAGKSAFLKLDD--SIFLLDIVAKNMTKVYE-----------ICPEDGDIERIYPLL 398
+ + + A L L++ + + + + + KVYE + R++PL
Sbjct: 379 AVGDNAEFALLDLENVGVVIYVHLQWRTVKKVYERKLADADDGGGGGGDRQPPVRVFPLT 438
Query: 399 MIWPPKFP 406
+WPP FP
Sbjct: 439 TVWPPTFP 446
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,978,590
Number of extensions: 666551
Number of successful extensions: 1407
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 9
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)