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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0313500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0193) R2 : 0.301
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.03 (0.328) R2dE : 0.294 R2E : 0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0669 (0.0407) R2dN8 : 0.00473 R2N8 : 0.00656
σ : 0.354
deviance : 57.45
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.987
memory length : 88
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.99
open length of G : 1.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.56 0.347 2.93 -0.116 0.188 1.43 -0.347 -16.6 -0.073 11.3 6.934 83 9 1.04
54.6 0.347 2.94 -0.053 0.186 4.86 -0.352 -- -0.0723 11.3 6.934 83 9 1.04
55.06 0.346 2.93 -0.13 0.191 1.36 -- -17 -0.0747 10.9 6.987 88 8.99 1.02
55.1 0.348 2.94 -0.0679 0.189 4.91 -- -- -0.0741 10.9 6.987 88 8.99 1.02
57.31 0.353 2.94 -0.132 -- 1.62 -- -16.3 -0.0753 -- 6.8 79 8.94 1.14
81.09 0.422 2.94 -0.107 0.236 -- -0.479 -- -0.0976 10.9 -- -- -- --
82.04 0.424 2.94 -0.127 0.24 -- -- -- -0.0996 10.6 -- -- -- --
57.32 0.354 2.94 -0.0707 -- 5.01 -- -- -0.0748 -- 6.987 88 8.99 1.02
55.22 0.348 2.94 -- 0.19 4.93 -- -- -0.0665 10.9 6.987 88 8.99 1.02
85.6 0.432 2.95 -0.132 -- -- -- -- -0.101 -- -- -- -- --
82.47 0.425 2.94 -- 0.241 -- -- -- -0.0855 10.6 -- -- -- --
57.45 0.354 2.94 -- -- 5.03 -- -- -0.0669 -- 6.987 88 8.99 1.02
86.05 0.433 2.95 -- -- -- -- -- -0.0862 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.58 wind 7.0 90 > th dose dependent rect. 9 1
2 54.61 wind 7.0 90 > th dose independent rect. 8 2
65 58.79 humidity 90.0 90 > th dose independent rect. 8 2
72 59.47 humidity 90.0 90 > th dose dependent rect. 8 2
79 59.80 wind 9.0 90 > th dose dependent rect. 22 12
315 71.34 radiation 10.0 90 < th dose dependent rect. 8 1
316 71.39 radiation 10.0 90 < th dose independent rect. 8 1
412 73.65 radiation 30.0 10 < th dose independent rect. 9 3
425 73.83 temperature 25.0 90 > th dose independent rect. 9 2
451 74.13 radiation 10.0 90 < th dose dependent rect. 8 4
510 74.82 temperature 30.0 90 > th dose dependent rect. 10 2
533 75.14 radiation 10.0 270 < th dose dependent rect. 6 6
538 75.17 radiation 10.0 270 < th dose independent rect. 6 6
621 75.84 radiation 30.0 10 < th dose independent rect. 20 16
636 75.92 radiation 40.0 90 < th dose dependent rect. 9 2
697 76.09 wind 7.0 10 > th dose independent sin 7 NA
756 76.32 temperature 30.0 10 > th dose independent rect. 11 1
761 76.34 radiation 40.0 10 < th dose dependent rect. 9 3
776 76.40 precipitation 0.1 1440 > th dose independent rect. 12 1
780 76.40 precipitation 0.1 1440 > th dose dependent rect. 12 1
790 76.44 wind 1.0 1440 < th dose dependent rect. 17 1
792 76.45 wind 1.0 1440 < th dose independent rect. 17 1
832 76.53 wind 1.0 1440 > th dose independent rect. 17 1
873 76.67 wind 7.0 720 > th dose independent rect. 22 12
887 76.74 radiation 30.0 10 < th dose independent rect. 9 17
908 76.84 radiation 30.0 10 < th dose independent rect. 9 15
919 76.88 precipitation 0.1 270 > th dose independent rect. 5 3
921 76.88 precipitation 0.1 270 > th dose dependent rect. 5 3
923 76.89 radiation 10.0 90 < th dose dependent rect. 11 1
927 76.90 temperature 10.0 30 > th dose dependent rect. 9 3
941 76.96 wind 7.0 720 < th dose independent rect. 1 8
946 76.97 radiation 10.0 270 < th dose independent rect. 6 21
978 77.06 temperature 30.0 30 > th dose dependent sin 7 NA