Os02g0288000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0288000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.67 | 0.447 | 7.92 | 1.66 | 0.141 | 0.666 | 0.895 | -2.88 | 0.397 | 5.03 | 13.15 | 793 | -- | -- |
| 94.51 | 0.453 | 7.93 | 1.57 | 0.442 | 0.298 | -0.877 | -- | 0.357 | 5.63 | 24.77 | 955 | -- | -- |
| 90.97 | 0.444 | 7.91 | 1.67 | 0.257 | 0.557 | -- | -2.01 | 0.399 | 5.02 | 17.13 | 854 | -- | -- |
| 96.22 | 0.457 | 7.92 | 1.59 | 0.291 | 0.521 | -- | -- | 0.378 | 4.56 | 16.46 | 913 | -- | -- |
| 91.66 | 0.446 | 7.92 | 1.63 | -- | 0.819 | -- | -1.96 | 0.398 | -- | 12.37 | 806 | -- | -- |
| 95.85 | 0.459 | 7.93 | 1.56 | 0.602 | -- | -1.01 | -- | 0.319 | 6.24 | -- | -- | -- | -- |
| 98.31 | 0.464 | 7.92 | 1.54 | 0.598 | -- | -- | -- | 0.322 | 6.07 | -- | -- | -- | -- |
| 96.51 | 0.458 | 7.93 | 1.58 | -- | 0.814 | -- | -- | 0.361 | -- | 6.821 | 793 | -- | -- |
| 160.23 | 0.59 | 7.95 | -- | 0.474 | 0.385 | -- | -- | 0.2 | 4.59 | 10 | 1048 | -- | -- |
| 116.86 | 0.505 | 7.93 | 1.56 | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
| 161.17 | 0.594 | 7.96 | -- | 0.621 | -- | -- | -- | 0.15 | 5.95 | -- | -- | -- | -- |
| 160.46 | 0.59 | 7.97 | -- | -- | 0.823 | -- | -- | 0.198 | -- | 10 | 786 | -- | -- |
| 181.18 | 0.628 | 7.97 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.95 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 2 | 89.02 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 4 | 89.12 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 5 | 89.19 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 6 | 89.20 | radiation | 30.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 27 | 89.36 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 39 | 89.51 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 17 |
| 48 | 89.65 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 3 |
| 50 | 89.68 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 10 |
| 55 | 89.74 | radiation | 10.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 68 | 89.87 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 73 | 89.94 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 111 | 90.15 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 139 | 90.23 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 186 | 90.40 | radiation | 20.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 256 | 90.54 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 263 | 90.60 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 268 | 90.61 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 270 | 90.62 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 277 | 90.64 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 5 |
| 280 | 90.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 290 | 90.70 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 302 | 90.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 304 | 90.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 310 | 90.77 | wind | 3.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 326 | 90.78 | radiation | 40.0 | 720 | > th | dose independent | rect. | 14 | 19 |
| 328 | 90.80 | wind | 3.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 331 | 90.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 359 | 90.85 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 366 | 90.86 | radiation | 10.0 | 720 | > th | dose independent | sin | 18 | NA |
| 367 | 90.86 | radiation | 10.0 | 720 | < th | dose independent | sin | 15 | NA |
| 370 | 90.87 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 403 | 90.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 407 | 90.96 | radiation | 10.0 | 720 | > th | dose independent | rect. | 10 | 7 |
| 437 | 90.98 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 472 | 91.02 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 510 | 91.04 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 528 | 91.06 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 17 | 14 |
| 532 | 91.07 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 558 | 91.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 564 | 91.11 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 568 | 91.12 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 7 |
| 572 | 91.13 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 8 |
| 579 | 91.14 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 22 | 7 |
| 638 | 91.19 | radiation | 1.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 644 | 91.20 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 658 | 91.20 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 9 |
| 676 | 91.21 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 698 | 91.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 700 | 91.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 702 | 91.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 10 |
| 725 | 91.25 | wind | 3.0 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 728 | 91.25 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 740 | 91.25 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 758 | 91.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 761 | 91.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 769 | 91.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 770 | 91.27 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 773 | 91.28 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 775 | 91.28 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 778 | 91.28 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 787 | 91.30 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 804 | 91.32 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 842 | 91.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 880 | 91.38 | radiation | 10.0 | 30 | > th | dose independent | rect. | 17 | 14 |
| 888 | 91.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 893 | 91.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 906 | 91.40 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 931 | 91.44 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 933 | 91.44 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 940 | 91.45 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 967 | 91.46 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 979 | 91.48 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 999 | 91.49 | humidity | 90.0 | 270 | > th | dose independent | rect. | 11 | 19 |