BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0288000 Os02g0288000|AK109705
(412 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0288000 Cyclin-like F-box domain containing protein 720 0.0
Os02g0287900 Curculin-like (mannose-binding) lectin domain ... 354 8e-98
Os02g0294100 Cyclin-like F-box domain containing protein 213 3e-55
Os02g0288925 136 3e-32
Os02g0287800 117 1e-26
Os04g0349550 106 3e-23
Os04g0324600 65 9e-11
>Os02g0288000 Cyclin-like F-box domain containing protein
Length = 412
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/412 (87%), Positives = 362/412 (87%)
Query: 1 MEDKGTQPPEPXXXXXISSVLANDDXXXXXXXXXXXPTTLVRAALVSTRWLRLASDPAFL 60
MEDKGTQPPEP ISSVLANDD PTTLVRAALVSTRWLRLASDPAFL
Sbjct: 1 MEDKGTQPPEPAAAAAISSVLANDDLLREILLRLGLPTTLVRAALVSTRWLRLASDPAFL 60
Query: 61 RRFRARHPPRLLGFYHTARARFQDEVPAFVXXXXXXXXXXXXXXXXXXXXPGSSGSGPDA 120
RRFRARHPPRLLGFYHTARARFQDEVPAFV PGSSGSGPDA
Sbjct: 61 RRFRARHPPRLLGFYHTARARFQDEVPAFVPLPQPPELAAALRGARLRLAPGSSGSGPDA 120
Query: 121 PVILSCRNGRVLAAEFPPDGPRVSIISPMHPARHPPALPLVYELPRQPGQILHASCMLLF 180
PVILSCRNGRVLAAEFPPDGPRVSIISPMHPARHPPALPLVYELPRQPGQILHASCMLLF
Sbjct: 121 PVILSCRNGRVLAAEFPPDGPRVSIISPMHPARHPPALPLVYELPRQPGQILHASCMLLF 180
Query: 181 PDVGSDDPSYTFVEFLRKDQEMLAKAVSVRAEISDLNSVRESATIEIQESWERSIRRDXX 240
PDVGSDDPSYTFVEFLRKDQEMLAKAVSVRAEISDLNSVRESATIEIQESWERSIRRD
Sbjct: 181 PDVGSDDPSYTFVEFLRKDQEMLAKAVSVRAEISDLNSVRESATIEIQESWERSIRRDVL 240
Query: 241 XXXXXXXXXXXXHVLGLNLASMRLFLFRLPDGVQQLHRMGNIELLRAGDSGLYLIHLKGF 300
HVLGLNLASMRLFLFRLPDGVQQLHRMGNIELLRAGDSGLYLIHLKGF
Sbjct: 241 VNGNLYLLGGKGHVLGLNLASMRLFLFRLPDGVQQLHRMGNIELLRAGDSGLYLIHLKGF 300
Query: 301 QIHVWFRASDSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAEVFLRV 360
QIHVWFRASDSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAEVFLRV
Sbjct: 301 QIHVWFRASDSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAEVFLRV 360
Query: 361 DRVIFHIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQLRNDHDQDQ 412
DRVIFHIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQLRNDHDQDQ
Sbjct: 361 DRVIFHIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQLRNDHDQDQ 412
>Os02g0287900 Curculin-like (mannose-binding) lectin domain containing protein
Length = 422
Score = 354 bits (908), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 216/409 (52%), Positives = 256/409 (62%), Gaps = 25/409 (6%)
Query: 20 VLANDDXXXXXXXXXXXPTTLVRAALVSTRWLRLASDPAFLRRFRARHPPRLLGFYHTAR 79
VLA+DD PTTLVRAALVS+RWL LASD +FLRRFRAR+PPRLLGFYHTAR
Sbjct: 23 VLADDDLLREILLRLAFPTTLVRAALVSSRWLGLASDSSFLRRFRARNPPRLLGFYHTAR 82
Query: 80 ARFQDEVPAFVXXXXXXXXXXXXXXXXXXXXPGSSGSGPDAPVILSCRNGRVLAAEFPP- 138
+DE PAFV G+ S V+ CRNGR+L AEFPP
Sbjct: 83 ---RDEQPAFVPLPQPPELAPVLRRLGGFALGGADVSA----VVFDCRNGRLLRAEFPPP 135
Query: 139 -DGPRVSIISPMHP-ARHPPALP--LVYELPRQP--GQILHASCMLL---FPDVGSDDPS 189
D R ++SP+ P AR PP LP L +L + P ++L MLL D G DD S
Sbjct: 136 PDELRFGVVSPLLPPARKPPDLPPNLHSQLHQVPNDARVLRPGWMLLPEEEEDDGGDDLS 195
Query: 190 YTFVEFLRKDQEMLAKAVSVRAEISDLNSVRESATIEI-QESWERSIRRDXXXXXXXXXX 248
YT V +R+ + + A+AV VR E D +R S +IE+ W
Sbjct: 196 YTLVVLIRRGRGLFARAVLVRGESDD--QIRTSDSIELPNHYWPNKKMNRGLLFHGSLYM 253
Query: 249 XXXXHVLGLNLASMRLFLFRLPDGVQQLHRMGNIELLRAGDSGLYLIHLKGFQIHVWFRA 308
HVLGLNLASM LFL +LPDGV+QL MGN+ELLR GDSGLYL HLKGFQIHVW RA
Sbjct: 254 LGREHVLGLNLASMSLFLIKLPDGVEQLEHMGNLELLRDGDSGLYLAHLKGFQIHVWHRA 313
Query: 309 SDSDIGGGNWELVDNICLGESFGQFAEPNWES-----GDALVALHRVEDNAEVFLRVDRV 363
+D GG+WE+VD + L +SFGQ A P+WES GDALV+L RVEDNAE+FL +DRV
Sbjct: 314 TDGGGNGGDWEMVDTMSLHQSFGQVARPDWESGDPSLGDALVSLRRVEDNAELFLTIDRV 373
Query: 364 IFHIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQLRNDHDQDQ 412
IFHIHI +RT NKVFEM+P+ F+IFPFMM+WPPTFP L D D DQ
Sbjct: 374 IFHIHIASRTANKVFEMAPKEDIGFEIFPFMMIWPPTFPALNYDDDDDQ 422
>Os02g0294100 Cyclin-like F-box domain containing protein
Length = 423
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 208/415 (50%), Gaps = 43/415 (10%)
Query: 20 VLANDDXXXXXXXXXXXPTTLVRAALVSTRWLRLASDPAFLRRFRARHPPRLLGFYHTA- 78
VL + D PT LVRAALV RWLR ASD AFLRRF HPPRLLGFY +
Sbjct: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
Query: 79 ---RARFQD-----EVPAFVXXXXXXXXXXXXXXXXXXXXPGSSGSGPDAPVILSCRNGR 130
R RF E+ A V G+G I CRNGR
Sbjct: 89 SLPRPRFVPLPHPPELAAVVRRGSFDLGTAADLHFHL-------GTG-----IYCCRNGR 136
Query: 131 VLAAEFPPDGPRVSIISPMHPARHPPALPLVYELPR-QPGQILHASCMLLFPDVGSDDP- 188
+L + + P+HPA + PR P H +LL P+ G D
Sbjct: 137 LLVCHRGGGESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQRHTRYILL-PEDGGDGDG 195
Query: 189 ---SYTFVEFLRKDQEMLAKAVSV-RAEISDLNSVRESATIEIQESWERSIRRDXXXXXX 244
+ T V + ++E+ AK + RA + D+ + SA IE+ W RS+ R
Sbjct: 196 DAVACTVVTLVSSEREVFAKVEKILRAGVWDV--AQTSAPIELPAHWRRSLSRGFLVNGK 253
Query: 245 XXXXXXXXHVLGLNLASMRLFLFRLPDGVQ-------QLHRMGNIELLRAGDSGLYLIHL 297
++LGL L SM LF +PD V+ QL +++L +A SGLYLIH+
Sbjct: 254 LYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQL----SVKLSQAEKSGLYLIHV 309
Query: 298 KGFQIHVWFRASDSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAE-V 356
+GF+IHVW +D + +W LV+ ICL E FG +P+WESGD+ ++L DNAE V
Sbjct: 310 EGFKIHVWLHGTDGN-SSADWNLVNTICLREVFGHLVKPSWESGDSRISLPGSGDNAEFV 368
Query: 357 FLRVDRVIFHIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQLRNDHDQD 411
FL VD +F + I++RTV KV+EM+ + F+I+PFMM+WPP FP L H+ +
Sbjct: 369 FLEVDGEVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPALIKTHEPE 423
>Os02g0288925
Length = 424
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 173/408 (42%), Gaps = 45/408 (11%)
Query: 21 LANDDXXXXXXXXXXXPTTLVRAALVSTRWLRLASDPAFLRRFRARHPPRLLGFYHTARA 80
L NDD PTTLVRAAL RWLR+ASDP+FLRRFR HPPRLLGFY T+
Sbjct: 30 LENDDLVGEILLRLAFPTTLVRAALACRRWLRVASDPSFLRRFRELHPPRLLGFYVTS-L 88
Query: 81 RFQDEVPAFVXXXXXXXXXXXXXXXXXXXXPGSSGSGPDAPVILSCRNGRVLAAEFPPDG 140
+ P FV + G I CRNG +L F
Sbjct: 89 KIPRAHPLFVPMPPPARPPELDPVVLRGGNFSLAYEGYTTS-IYQCRNGSILL--FKERH 145
Query: 141 PRVSIISPMH-PARHPPALPLVYELPRQPGQILHASCMLLFPDVGSDDPSYTFVEF---- 195
R + +H P +HP L P H + PD+G DD + F
Sbjct: 146 DRRELKYAVHRPLQHPERGLLAI-----PFSSTHDDDDDVEPDLGFDDENVWGFHFGEDG 200
Query: 196 ---LRKDQEMLAKAVSVRAEISDLNS----VRESATIEI----QESWERSIRRDXXXXXX 244
L + M + A V AT ++ ES + RD
Sbjct: 201 GSQLYRLSVMFTPRGATSAWFYAFRDGGWHVHTKATAQLPGLPPESAGFVVVRDKAYLAA 260
Query: 245 XXXXXXXXHVLGLNLASMRLFLFRLPDGVQ-------QLHRMGNIELLRAG-DSGLYLIH 296
VL L+L S L+ +LPDGV+ R ++ RA DSG+Y+
Sbjct: 261 TSSS-----VLVLDLKSSSLYTIQLPDGVEFPPVMMWYNDRSHDVLFGRASDDSGVYIAD 315
Query: 297 LKGFQIHVWFRASDSDIGGGNWELVDNICLGESFGQFAEPNWESGDA-LVALHRVEDNAE 355
LK Q+ +W G W LVD ICL S N GD+ +V + V D+AE
Sbjct: 316 LKEPQLRIWLLKH----GSTGWTLVDTICL-RSMCANLHINCVGGDSRVVYMDYVGDDAE 370
Query: 356 -VFLRVDRVIFHIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFP 402
+FL+ D ++ + +R ++KV+E++ + F I PFMM+WPP FP
Sbjct: 371 FLFLKTDECALYLDVKSRQLHKVYEVTEKDEILFSIMPFMMIWPPIFP 418
>Os02g0287800
Length = 450
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 150/328 (45%), Gaps = 42/328 (12%)
Query: 112 GSSGSGPDAPVILSCRNGRVLAAEFPP----DGPRVSIISPM-HPARHPPALPLVYELPR 166
GS G G PV CRNGRVL P DG ++++SP+ H +R LP V R
Sbjct: 129 GSIGGGEPLPV-YDCRNGRVLMDLSDPFDRGDG-TLAVVSPLLHASRSLAVLPPVPLAAR 186
Query: 167 QP--------GQILH--ASCMLLFPDVGSDDPSYTFVEFLRKDQ-------EMLAKAVSV 209
P +L +L P+ G D SYT V +R + E AK +
Sbjct: 187 PPPVSAMGDDDTLLGRATDVCILLPEDGCDGQSYTVVTLVRSKRVDWRVWWEFFAKVSVL 246
Query: 210 RAEISDLNSVRESATIEI------QESWERSIRRDXXXXXXXXXXXXXXHVLGLNLASMR 263
RA D + VR +A +E+ +W R++ +L L+LASM
Sbjct: 247 RAGAWD-DDVRATAPVELPARCRGDTTWNRAL---LVQGKLYVLGMQSHAILVLDLASMA 302
Query: 264 LFLFRLPDGVQQLHRMGNIELLRAGDSGLYLIHLKGFQIHVWFR----ASDSDIGGGNWE 319
LPDGV+ G+++L R+ D+G+ LIH+ GFQ +W R + GNW
Sbjct: 303 TSFINLPDGVRH-EEDGDLDLFRSNDAGVNLIHVNGFQARLWRRGGDDDDGDGMTAGNWV 361
Query: 320 LVDNICLGESFGQFAEPNWESG-DALVALHRVEDNAE-VFLRVDRVIFHIHIMNRTVNKV 377
LVD+I + F A+ E V + +V D+ E +FL VD + ++ I R V K+
Sbjct: 362 LVDDIGVRRGFDHLAKVGGEMDIGGPVGVIKVGDDCEFMFLCVDGDVLYMDIRTRMVKKI 421
Query: 378 FEMSPEAYRYFDIF-PFMMLWPPTFPQL 404
F+ SP+ + P M+WPP FP L
Sbjct: 422 FKASPKRGGVLPVIHPLTMVWPPIFPVL 449
>Os04g0349550
Length = 384
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 13/155 (8%)
Query: 253 HVLGLNLASMRLFLFRLPDGVQQLHRMGNIELLRAG---DSGLYLIHLKGFQIHVWFRAS 309
++LGL+L SM LF+ LP+G++ N E+L+ DS LY+ HL G ++H+WF
Sbjct: 230 YILGLDLVSMSLFIIDLPNGLEH----SNPEMLQLSQEEDSKLYIFHLNGLKLHIWFHDI 285
Query: 310 DSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAE-VFLRVDRVIFHIH 368
++ NW L+D I E FG A P+W+S + + + R ++ + ++L VD ++ +H
Sbjct: 286 NNTGNTSNWVLIDTISFLEVFGHIANPSWDS-EVDIKIARGGNSGDFIYLHVDDDVYLVH 344
Query: 369 IMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQ 403
I R V KVF+ + F + PFMM WPPTF +
Sbjct: 345 IKKRMVEKVFDNG----KVFRVHPFMMAWPPTFTK 375
>Os04g0324600
Length = 531
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 253 HVLGLNLASMRLFLFRLPDGVQQLH--RMG-----NIELLRAGDSGLYLIHLKGFQIHVW 305
+ LGL L + R + LPD + RM + L L+H G ++ +W
Sbjct: 268 YTLGLRLGTTRFSVVELPDAARSSANFRMAWSYAAAADDDDFARGRLCLVHGDGTRLSIW 327
Query: 306 FRAS-----DSDIGGGNWELVDNICLGESFG--QFAEPNWESGDALVALHRVEDNAE-VF 357
R + D G W L D C+ E+ ++ W +G VA+ V DNAE
Sbjct: 328 HRKTTTMEDDGGAAGVGWRLADTFCVREACERVEWLPDGWWTGR--VAVIAVGDNAEFAL 385
Query: 358 LRVDRV--IFHIHIMNRTVNKVFEMS-PEAY----------RYFDIFPFMMLWPPTFPQL 404
L +++V + ++H+ RTV KV+E P+A R +FP +WPPTFP L
Sbjct: 386 LDLEKVGVVIYVHLRWRTVKKVYERKLPDADDGGGGGGDRQRPVRVFPMTTVWPPTFPAL 445
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,104,242
Number of extensions: 572351
Number of successful extensions: 1701
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1680
Number of HSP's successfully gapped: 9
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)