BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0294100 Os02g0294100|AK066590
(423 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0294100 Cyclin-like F-box domain containing protein 753 0.0
Os02g0288000 Cyclin-like F-box domain containing protein 264 8e-71
Os02g0287900 Curculin-like (mannose-binding) lectin domain ... 262 3e-70
Os02g0288925 182 5e-46
Os04g0349550 166 3e-41
Os04g0324600 159 2e-39
Os02g0296300 Conserved hypothetical protein 148 7e-36
Os02g0287800 147 1e-35
Os04g0313500 Cyclin-like F-box domain containing protein 142 3e-34
>Os02g0294100 Cyclin-like F-box domain containing protein
Length = 423
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/423 (89%), Positives = 379/423 (89%)
Query: 1 MDRKRXXXXXXXXXXXXXXXXXXXXXXXVLDDGDLLREILLRLAHPTFLVRAALVCRRWL 60
MDRKR VLDDGDLLREILLRLAHPTFLVRAALVCRRWL
Sbjct: 1 MDRKRPRPPQPSPPPPVASSAASSSSSSVLDDGDLLREILLRLAHPTFLVRAALVCRRWL 60
Query: 61 RHASDRAFLRRFAVLHPPRLLGFYVDSASXXXXXXXXXXXXXELAAVVRRGSFDLGTAAD 120
RHASDRAFLRRFAVLHPPRLLGFYVDSAS ELAAVVRRGSFDLGTAAD
Sbjct: 61 RHASDRAFLRRFAVLHPPRLLGFYVDSASLPRPRFVPLPHPPELAAVVRRGSFDLGTAAD 120
Query: 121 LHFHLGTGIYCCRNGRLLVCHRGGGESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQRH 180
LHFHLGTGIYCCRNGRLLVCHRGGGESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQRH
Sbjct: 121 LHFHLGTGIYCCRNGRLLVCHRGGGESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQRH 180
Query: 181 TRYILLPEXXXXXXXXAVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHW 240
TRYILLPE AVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHW
Sbjct: 181 TRYILLPEDGGDGDGDAVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHW 240
Query: 241 RRSLSRGFLVNGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLSVKLSQAE 300
RRSLSRGFLVNGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLSVKLSQAE
Sbjct: 241 RRSLSRGFLVNGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLSVKLSQAE 300
Query: 301 KSGLYLIHVEGFKIHVWLHGTDGNSSADWNLVNTICLREVFGHLVKPSWESGDSRISLPG 360
KSGLYLIHVEGFKIHVWLHGTDGNSSADWNLVNTICLREVFGHLVKPSWESGDSRISLPG
Sbjct: 301 KSGLYLIHVEGFKIHVWLHGTDGNSSADWNLVNTICLREVFGHLVKPSWESGDSRISLPG 360
Query: 361 SGDNAEFVFLEVDGEVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPALIKTH 420
SGDNAEFVFLEVDGEVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPALIKTH
Sbjct: 361 SGDNAEFVFLEVDGEVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPALIKTH 420
Query: 421 EPE 423
EPE
Sbjct: 421 EPE 423
>Os02g0288000 Cyclin-like F-box domain containing protein
Length = 412
Score = 264 bits (675), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 223/404 (55%), Gaps = 25/404 (6%)
Query: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
VL + DLLREILLRL PT LVRAALV RWLR ASD AFLRRF HPPRLLGFY +
Sbjct: 20 VLANDDLLREILLRLGLPTTLVRAALVSTRWLRLASDPAFLRRFRARHPPRLLGFYHTAR 79
Query: 89 SXXXXXXXXXX---XXXELAAVVRRGSFDLGTAADLHFHLGTGIYCCRNGRLLVCHRGGG 145
+ ELAA +R L + I CRNGR+L
Sbjct: 80 ARFQDEVPAFVPLPQPPELAAALRGARLRLAPGSSGSGPDAPVILSCRNGRVLAAEFPPD 139
Query: 146 ESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQRHTRYILL-PEXXXXXXXXAVACTVVT 204
+ + P+HPA + PR P H +LL P+ + T V
Sbjct: 140 GPRVSIISPMHPARHPPALPLVYELPR-QPGQILHASCMLLFPDVGSDDP----SYTFVE 194
Query: 205 LVSSEREVFAKVEKILRAGVWDV--AQTSAPIELPAHWRRSLSRGFLVNGKLYMLGTTGY 262
+ ++E+ AK + RA + D+ + SA IE+ W RS+ R LVNG LY+LG G+
Sbjct: 195 FLRKDQEMLAKAVSV-RAEISDLNSVRESATIEIQESWERSIRRDVLVNGNLYLLGGKGH 253
Query: 263 ILGLELVSMSLFFIEVPDAVRDDCPESFQL----SVKLSQAEKSGLYLIHVEGFKIHVWL 318
+LGL L SM LF +PD V+ QL +++L +A SGLYLIH++GF+IHVW
Sbjct: 254 VLGLNLASMRLFLFRLPDGVQ-------QLHRMGNIELLRAGDSGLYLIHLKGFQIHVWF 306
Query: 319 HGTDGN-SSADWNLVNTICLREVFGHLVKPSWESGDSRISLPGSGDNAEFVFLEVDGEVF 377
+D + +W LV+ ICL E FG +P+WESGD+ ++L DNAE VFL VD +F
Sbjct: 307 RASDSDIGGGNWELVDNICLGESFGQFAEPNWESGDALVALHRVEDNAE-VFLRVDRVIF 365
Query: 378 CMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPALIKTHE 421
+ I++RTV KV+EM+ + F+I+PFMM+WPP FP L H+
Sbjct: 366 HIHIMNRTVNKVFEMSPEAYRYFDIFPFMMLWPPTFPQLRNDHD 409
>Os02g0287900 Curculin-like (mannose-binding) lectin domain containing protein
Length = 422
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 231/412 (56%), Gaps = 44/412 (10%)
Query: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
VL D DLLREILLRLA PT LVRAALV RWL ASD +FLRRF +PPRLLGFY +
Sbjct: 23 VLADDDLLREILLRLAFPTTLVRAALVSSRWLGLASDSSFLRRFRARNPPRLLGFYHTAR 82
Query: 89 SXXXXXXXXXXXXXELAAVVRR-GSFDLGTAADLHFHLGTGIYCCRNGRLLVCHRGGGES 147
ELA V+RR G F LG A + ++ CRNGRLL
Sbjct: 83 RDEQPAFVPLPQPPELAPVLRRLGGFALGGA-----DVSAVVFDCRNGRLLRAEFPPPPD 137
Query: 148 TLQLR--RPLHPASDGAVISTFRTPPRPLPPN---QRHT----------RYILLPEXXXX 192
L+ PL P + R PP LPPN Q H ++LLPE
Sbjct: 138 ELRFGVVSPLLPPA--------RKPPD-LPPNLHSQLHQVPNDARVLRPGWMLLPEEEED 188
Query: 193 XXXXAVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHW--RRSLSRGFLV 250
++ T+V L+ R +FA+ ++R D +TS IELP H+ + ++RG L
Sbjct: 189 DGGDDLSYTLVVLIRRGRGLFARA-VLVRGESDDQIRTSDSIELPNHYWPNKKMNRGLLF 247
Query: 251 NGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLSVKLSQAEKSGLYLIHVE 310
+G LYMLG ++LGL L SMSLF I++PD V +++L + SGLYL H++
Sbjct: 248 HGSLYMLGRE-HVLGLNLASMSLFLIKLPDGVEQ---LEHMGNLELLRDGDSGLYLAHLK 303
Query: 311 GFKIHVWLHGTD-GNSSADWNLVNTICLREVFGHLVKPSWES-----GDSRISLPGSGDN 364
GF+IHVW TD G + DW +V+T+ L + FG + +P WES GD+ +SL DN
Sbjct: 304 GFQIHVWHRATDGGGNGGDWEMVDTMSLHQSFGQVARPDWESGDPSLGDALVSLRRVEDN 363
Query: 365 AEFVFLEVDGEVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPAL 416
AE +FL +D +F + I SRT KV+EMA K+D FEI+PFMM+WPP FPAL
Sbjct: 364 AE-LFLTIDRVIFHIHIASRTANKVFEMAPKEDIGFEIFPFMMIWPPTFPAL 414
>Os02g0288925
Length = 424
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 202/411 (49%), Gaps = 48/411 (11%)
Query: 30 LDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDS-- 87
L++ DL+ EILLRLA PT LVRAAL CRRWLR ASD +FLRRF LHPPRLLGFYV S
Sbjct: 30 LENDDLVGEILLRLAFPTTLVRAALACRRWLRVASDPSFLRRFRELHPPRLLGFYVTSLK 89
Query: 88 ---ASXXXXXXXXXXXXXELAAVVRRGSFDLGTAADLHFHLGTGIYCCRNGRLLVCHRGG 144
A EL VV RG G + + T IY CRNG +L+
Sbjct: 90 IPRAHPLFVPMPPPARPPELDPVVLRG----GNFSLAYEGYTTSIYQCRNGSILLFKERH 145
Query: 145 GESTLQ--LRRPLHPASDGAVISTFRTP--------PRPLPPNQRHTRYILLPEXXXXXX 194
L+ + RPL G + F + P ++ + +
Sbjct: 146 DRRELKYAVHRPLQHPERGLLAIPFSSTHDDDDDVEPDLGFDDENVWGFHFGEDGGSQLY 205
Query: 195 XXAVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHWRRSLSRGFLV-NGK 253
+V T S+ F R G W V T A +LP S GF+V K
Sbjct: 206 RLSVMFTPRGATSAWFYAF-------RDGGWHV-HTKATAQLPG--LPPESAGFVVVRDK 255
Query: 254 LYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLSVKLSQ-------AEKSGLYL 306
Y+ T+ +L L+L S SL+ I++PD V + P S ++ SG+Y+
Sbjct: 256 AYLAATSSSVLVLDLKSSSLYTIQLPDGV--EFPPVMMWYNDRSHDVLFGRASDDSGVYI 313
Query: 307 IHVEGFKIHVWL--HGTDGNSSADWNLVNTICLREVFGHLVKPSWESGDSRI-SLPGSGD 363
++ ++ +WL HG+ G W LV+TICLR + +L + GDSR+ + GD
Sbjct: 314 ADLKEPQLRIWLLKHGSTG-----WTLVDTICLRSMCANL-HINCVGGDSRVVYMDYVGD 367
Query: 364 NAEFVFLEVDGEVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFP 414
+AEF+FL+ D +D+ SR + KVYE+ KD+ LF I PFMM+WPPIFP
Sbjct: 368 DAEFLFLKTDECALYLDVKSRQLHKVYEVTEKDEILFSIMPFMMIWPPIFP 418
>Os04g0349550
Length = 384
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 122/199 (61%), Gaps = 12/199 (6%)
Query: 221 RAGVWDVAQTSAPIELPAHWRRSLSRGFLVNGKLYMLGTTGYILGLELVSMSLFFIEVPD 280
+ G W S I+LP+ W + + G L++ K YMLG + YILGL+LVSMSLF I++P+
Sbjct: 189 KDGAWSYNHISTMIDLPSRWLQRKNSGLLIDTKFYMLGPSKYILGLDLVSMSLFIIDLPN 248
Query: 281 AVRDDCPESFQLSVKLSQAEKSGLYLIHVEGFKIHVWLHGTD--GNSSADWNLVNTICLR 338
+ PE Q LSQ E S LY+ H+ G K+H+W H + GN+S +W L++TI
Sbjct: 249 GLEHSNPEMLQ----LSQEEDSKLYIFHLNGLKLHIWFHDINNTGNTS-NWVLIDTISFL 303
Query: 339 EVFGHLVKPSWESGDSRISLPGSGDNAEFVFLEVDGEVFCMDIISRTVEKVYEMAMKDDF 398
EVFGH+ PSW+S + I + G++ +F++L VD +V+ + I R VEKV++
Sbjct: 304 EVFGHIANPSWDS-EVDIKIARGGNSGDFIYLHVDDDVYLVHIKKRMVEKVFDNGK---- 358
Query: 399 LFEIYPFMMVWPPIFPALI 417
+F ++PFMM WPP F I
Sbjct: 359 VFRVHPFMMAWPPTFTKKI 377
>Os04g0324600
Length = 531
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 194/442 (43%), Gaps = 63/442 (14%)
Query: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
VL D DLL EILLRL L+ AA+VC+ WLR AS FLRRF V+HPPRLLGF VD
Sbjct: 23 VLSDEDLLGEILLRLESHEHLIAAAIVCKHWLRVASGDLFLRRFRVIHPPRLLGFCVDDG 82
Query: 89 SXXXXXXXXXXXXXELAAV-------VRRGSFDLGTAADLHFHLGTGIYCCRNGRLLVCH 141
+ V R G F G L + I CR+GRLLV
Sbjct: 83 GGDVGRRPQFKALPQHPGVAAAAAHRTRHGYF--GAFGHLAGYHRPSIADCRDGRLLV-- 138
Query: 142 RGGGESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQ--------------RH-TRYILL 186
EST R P + T PP P Q +H + L
Sbjct: 139 ----EST--DRAPRRLGINTPYRYTVLRPPHPRESVQLLPPLPPPPGGGAGKHVVERVFL 192
Query: 187 PEXXXXXXXXAVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHWRRSLSR 246
PE T+V ++ ER V A+V + G W A T+A ELPA
Sbjct: 193 PE-DGGGAGGDHGITLVYVLLVERRVTARVHVLDSGGAWG-APTTAETELPAPSCDDAVE 250
Query: 247 GFL--VNGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDC----PESFQLSVKLSQAE 300
L +NG++Y++ T+GY LGL L + +E+PDA R S+ +
Sbjct: 251 TVLPPINGEVYVVTTSGYTLGLRLGTTRFSVVELPDAARSSANFRMAWSYAAAADDDDFA 310
Query: 301 KSGLYLIHVEGFKIHVWLHGT------DGNSSADWNLVNTICLREVFGHL--VKPSWESG 352
+ L L+H +G ++ +W T G + W L +T C+RE + + W +G
Sbjct: 311 RGRLCLVHGDGTRLSIWHRKTTTMEDDGGAAGVGWRLADTFCVREACERVEWLPDGWWTG 370
Query: 353 DSRISLPGSGDNAEFVFLEVD--GEVFCMDIISRTVEKVYEMAMKDDFL----------- 399
R+++ GDNAEF L+++ G V + + RTV+KVYE + D
Sbjct: 371 --RVAVIAVGDNAEFALLDLEKVGVVIYVHLRWRTVKKVYERKLPDADDGGGGGGDRQRP 428
Query: 400 FEIYPFMMVWPPIFPALIKTHE 421
++P VWPP FPAL K +
Sbjct: 429 VRVFPMTTVWPPTFPALDKPRQ 450
>Os02g0296300 Conserved hypothetical protein
Length = 456
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 186/401 (46%), Gaps = 46/401 (11%)
Query: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
V D+ DLLREIL+R+A P LVRA+LVC+ WLR+ASD FLRRF LHPP LGFY+DS+
Sbjct: 39 VFDNDDLLREILVRVALPHCLVRASLVCKSWLRNASDLVFLRRFRSLHPPPTLGFYIDSS 98
Query: 89 SXXX-XXXXXXXXXXELAAVVRRGSFDLGTAADLHFHLGTGIYCCRNGRLLVCHRGGGES 147
EL ++ R S +D+ ++ RNGR+LV G
Sbjct: 99 VLSCPRFVALQGHPPELGVLLGRASRHFDAWSDVPL----SMWDSRNGRVLVEIYG---- 150
Query: 148 TLQLRRPLHPASDGAVISTFRTPPRPLPPNQRHTRYI--LLP-------EXXXXXXXXAV 198
L + PL P +D IS + P + ++ T + LP E
Sbjct: 151 KLAVHSPLLPPAD---ISVYPQTPLKVWLDRSFTYNLHEFLPEDGGNGREYYRLALGYKC 207
Query: 199 ACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHWRRS---LSRGFLVNGKLY 255
C + L L G+W V + S I P ++ + G GKL+
Sbjct: 208 KCMIAYLFH------------LVDGIW-VGRASDTISFPGPDEQAELVIPLGVHAFGKLF 254
Query: 256 MLGTTGYILGLELVSMSLFFIEVPDAVR-DDCPESFQLSVKLSQAEKSGLYLIHVEGFKI 314
+L I+ L+ ++ L + + D + +DC E KL L+ + K+
Sbjct: 255 LLTNFSIIIVLDCKTLELTKVNITDEIELEDCDEVDLCEGKLEDE----FTLVCLHPTKL 310
Query: 315 HVWLHGTDGNSSADWNLVNTICLREVFGHLVKPSWESGDSRISLPGSGDNAEFVFLEVDG 374
VW H S W L +++ ++ V + ES + +S+ G + + FL++D
Sbjct: 311 QVWTHNL---SQITWTLSHSVARDDILQASVTEAGESC-AHVSILGIANAGKSAFLKLDD 366
Query: 375 EVFCMDIISRTVEKVYEMAMKDDFLFEIYPFMMVWPPIFPA 415
+F +DI+++ + KVYE+ +D + IYP +M+WPP FPA
Sbjct: 367 SIFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFPA 407
>Os02g0287800
Length = 450
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 170/320 (53%), Gaps = 41/320 (12%)
Query: 129 IYCCRNGRLLVCHRGG---GESTLQLRRPL-HPASDGAVISTFRTPPRPLPPNQ------ 178
+Y CRNGR+L+ G+ TL + PL H + AV+ RP P +
Sbjct: 139 VYDCRNGRVLMDLSDPFDRGDGTLAVVSPLLHASRSLAVLPPVPLAARPPPVSAMGDDDT 198
Query: 179 ---RHTRY-ILLPEXXXXXXXXAVACTVVTLVSSER-------EVFAKVEKILRAGVWDV 227
R T ILLPE + TVVTLV S+R E FAKV +LRAG WD
Sbjct: 199 LLGRATDVCILLPEDGCD----GQSYTVVTLVRSKRVDWRVWWEFFAKVS-VLRAGAWDD 253
Query: 228 -AQTSAPIELPAHWR--RSLSRGFLVNGKLYMLGTTGY-ILGLELVSMSLFFIEVPDAVR 283
+ +AP+ELPA R + +R LV GKLY+LG + IL L+L SM+ FI +PD VR
Sbjct: 254 DVRATAPVELPARCRGDTTWNRALLVQGKLYVLGMQSHAILVLDLASMATSFINLPDGVR 313
Query: 284 DDCPESFQLSVKLSQAEKSGLYLIHVEGFKIHVWLHGTDGN-----SSADWNLVNTICLR 338
+ E L L ++ +G+ LIHV GF+ +W G D + ++ +W LV+ I +R
Sbjct: 314 HE--EDGDLD--LFRSNDAGVNLIHVNGFQARLWRRGGDDDDGDGMTAGNWVLVDDIGVR 369
Query: 339 EVFGHLVKPSWESG-DSRISLPGSGDNAEFVFLEVDGEVFCMDIISRTVEKVYEMAMK-D 396
F HL K E + + GD+ EF+FL VDG+V MDI +R V+K+++ + K
Sbjct: 370 RGFDHLAKVGGEMDIGGPVGVIKVGDDCEFMFLCVDGDVLYMDIRTRMVKKIFKASPKRG 429
Query: 397 DFLFEIYPFMMVWPPIFPAL 416
L I+P MVWPPIFP L
Sbjct: 430 GVLPVIHPLTMVWPPIFPVL 449
>Os04g0313500 Cyclin-like F-box domain containing protein
Length = 538
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 187/444 (42%), Gaps = 65/444 (14%)
Query: 29 VLDDGDLLREILLRLAHPTFLVRAALVCRRWLRHASDRAFLRRFAVLHPPRLLGFYVDSA 88
VL D DLL EILLRL LV A+VC+ WLR AS FLRRF V+HPPRLLGF VD
Sbjct: 24 VLSDEDLLGEILLRLESHDHLVAVAIVCKHWLRVASGELFLRRFRVIHPPRLLGFCVDDG 83
Query: 89 SXXXXXXXXXXXXXELAAVV------RRGSFDLGTAADLHFHLGTGIYCCRNGRLLVCHR 142
V R G L + I CR+GR+LV
Sbjct: 84 GGGDAGRRPQFKALPQHPGVAAAAAHRTRHRFFGAFGHLAGYHRPSIADCRDGRVLVESP 143
Query: 143 GGGESTLQLRRPLHPASDGAVISTFRTPPRPLPPNQ--------------RH-TRYILLP 187
L + P T PP P Q +H + LP
Sbjct: 144 DRAPRRLGINTPYR--------YTVLRPPHPRESVQLLPPLPPPPGRGAGKHVVERVFLP 195
Query: 188 EXXXXXXXXAVACTVVTLVSSEREVFAKVEKILRAGVWDVAQTSAPIELPAHWRRSLSRG 247
E T+V ++ ER V A+V + G W A T+A ELPA
Sbjct: 196 E-DGGGGGGDHGITLVYVLLVERRVTARVHVLDSGGAWG-APTTAETELPAPSCDDAVDT 253
Query: 248 FL--VNGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPESFQLS-------VKLSQ 298
L +NG +Y++ T+GY LGL L + +E+PDA R +F+++
Sbjct: 254 VLPPINGDVYVVTTSGYTLGLRLGTTRFTVVELPDAARSSA--NFRMAWSHAAAAADDDD 311
Query: 299 AEKSGLYLIHVEGFKIHVWLHGTD------GNSSADWNLVNTICLREVFGHL--VKPSWE 350
+ L L+H +G ++ VW T G + W L +T C+RE + + W
Sbjct: 312 VARGRLCLVHGDGTRLSVWHRKTTTTEDDGGAAGVGWRLADTFCVREACERIEWLPDGWW 371
Query: 351 SGDSRISLPGSGDNAEFVFLEVD--GEVFCMDIISRTVEKVYEMAMKDDFL--------- 399
+G R+++ GDNAEF L+++ G V + + RTV+KVYE + D
Sbjct: 372 TG--RVAVIAVGDNAEFALLDLENVGVVIYVHLQWRTVKKVYERKLADADDGGGGGGDRQ 429
Query: 400 --FEIYPFMMVWPPIFPALIKTHE 421
++P VWPP FP L K +
Sbjct: 430 PPVRVFPLTTVWPPTFPELDKPRQ 453
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,332,012
Number of extensions: 610061
Number of successful extensions: 2166
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2150
Number of HSP's successfully gapped: 12
Length of query: 423
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 319
Effective length of database: 11,605,545
Effective search space: 3702168855
Effective search space used: 3702168855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)