BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0194000 Os02g0194000|AK064096
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0194000 Myb, DNA-binding domain containing protein 559 e-160
Os11g0183700 SWIRM domain containing protein 106 3e-23
AK110000 94 1e-19
Os12g0176600 SWIRM domain containing protein 82 4e-16
Os04g0480300 SWIRM domain containing protein 81 9e-16
>Os02g0194000 Myb, DNA-binding domain containing protein
Length = 302
Score = 559 bits (1441), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/302 (90%), Positives = 272/302 (90%)
Query: 1 MPSKLCTGCRTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEITEDAKSDWT 60
MPSKLCTGCRTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEITEDAKSDWT
Sbjct: 1 MPSKLCTGCRTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEITEDAKSDWT 60
Query: 61 DKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMGPKEDKIQFGNDC 120
DKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMGPKEDKIQFGNDC
Sbjct: 61 DKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMGPKEDKIQFGNDC 120
Query: 121 DLNEESGSHISKRLRLTPLADASNPIMAQVAFLSAIVGXXXXXXXXXXXXXXXXXXDISA 180
DLNEESGSHISKRLRLTPLADASNPIMAQVAFLSAIVG DISA
Sbjct: 121 DLNEESGSHISKRLRLTPLADASNPIMAQVAFLSAIVGSDVAVAAGQAAISAQSQVDISA 180
Query: 181 SETDXXXXXXXXXXXXCTNGLSANDLLKEASANAQVQLEKERKAIEQSLSDIVGVQMKEI 240
SETD CTNGLSANDLLKEASANAQVQLEKERKAIEQSLSDIVGVQMKEI
Sbjct: 181 SETDSSINISKEEESSCTNGLSANDLLKEASANAQVQLEKERKAIEQSLSDIVGVQMKEI 240
Query: 241 QDKIRRFEQKELLMEKERKQLHCLKELLFSDQLAVVQHQRRPPAVTTESKDDEKPKPVIS 300
QDKIRRFEQKELLMEKERKQLHCLKELLFSDQLAVVQHQRRPPAVTTESKDDEKPKPVIS
Sbjct: 241 QDKIRRFEQKELLMEKERKQLHCLKELLFSDQLAVVQHQRRPPAVTTESKDDEKPKPVIS 300
Query: 301 IS 302
IS
Sbjct: 301 IS 302
>Os11g0183700 SWIRM domain containing protein
Length = 784
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 145/304 (47%), Gaps = 33/304 (10%)
Query: 6 CTGC-RTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEI----TEDAKSDWT 60
C+ C + + L Y S ++ADI+LC+ C+ A Y G +S DF+RI+ +E+ WT
Sbjct: 360 CSYCLQPLTSLHYQSLKEADIALCSDCFHDARYITGHSSLDFQRIDGDNDRSENDGDSWT 419
Query: 61 DKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMG---------PKE 111
D+ETL LLE + Y ++W ++ HVG++S+ CI F RLP + + P
Sbjct: 420 DQETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENIEVPDASVPFR 479
Query: 112 DKIQFGNDCDLNEESGSHISKRL---RLTPLADASNPIMAQVAFLSAIVGXXXXXXXXXX 168
+ D N + ++ +++ P ++SNP+M+ V FL++ +G
Sbjct: 480 AETNGYPHLDCNGSTSGNLPQKIPPDNQLPFINSSNPVMSLVGFLASAMGPRVAASCASA 539
Query: 169 XXXXXXXXDISASE-----TDXXXXXXXXXXXXCTNGLSANDL-----------LKEASA 212
D S +D G+S++ L A+
Sbjct: 540 ALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAAT 599
Query: 213 NAQVQLEKERKAIEQSLSDIVGVQMKEIQDKIRRFEQKELLMEKERKQLHCLKELLFSDQ 272
A++ ++E + I++ + ++ Q+K ++ K+++F + E L+ KE +Q+ +++ + SD+
Sbjct: 600 KAKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDR 659
Query: 273 LAVV 276
+ +V
Sbjct: 660 VRIV 663
>AK110000
Length = 1068
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 32/173 (18%)
Query: 2 PSKLCTGCRTVCG-LAYFSCEKADISLCARCYVRANYRPGLTSADFKRIE---------- 50
P C C + C + Y S + + SLCA CY+ + + S DF R+E
Sbjct: 668 PRYTCDTCGSDCTRVRYHSIKAKNYSLCASCYLEGRFPSSMYSGDFVRMEDSVLKQSGGV 727
Query: 51 --ITEDAKSDWTDKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQF-- 106
A+ DWTD ETL LLE + + +DW V++HVG+RS + CI +F +LP + F
Sbjct: 728 TGGAAAAQDDWTDAETLRLLEGLEMFDDDWSAVANHVGTRSREQCITKFIQLPIEDGFLD 787
Query: 107 ------MGPKEDKIQFGNDCDLNEESGSHISKRLRLTPLADASNPIMAQVAFL 153
+GP +Q+ D ++ G I P A A NP+M+ VAFL
Sbjct: 788 GASQADLGP----LQYARR-DAVDKLGKPI------VPFAQADNPVMSVVAFL 829
>Os12g0176600 SWIRM domain containing protein
Length = 740
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 20/170 (11%)
Query: 5 LCTGC-RTVCGLAYFSCEKADISLCARCYVRANYRPGLTSADFKRIEITEDAKSD----W 59
C+ C + + L Y S ++ADI+LC+ C+ A + G +S DF+R++ +D + W
Sbjct: 364 FCSFCAQPLPSLHYESQKEADIALCSDCFHDARFVTGHSSLDFQRVDGKKDGLDNDGDSW 423
Query: 60 TDKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFM-GPKEDKIQFGN 118
TD+ET LLE + Y E+W V+ HVG++S+ C+ F RLP + + K + F +
Sbjct: 424 TDQETFLLLEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENIKVPEASFSS 483
Query: 119 DCDLNEESGSHISKRLRL--------------TPLADASNPIMAQVAFLS 154
L + + + K +L P + +NP+M+ ++ +S
Sbjct: 484 KFWLMQNASGSVFKLPQLFALGSLPQSGEAGDLPFINTANPVMSLISIMS 533
>Os04g0480300 SWIRM domain containing protein
Length = 560
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 8 GCRTVCGLAYFSCE-------KADISLCARCYVR------ANYRPGLTSADFKRIEITED 54
G +CGL C K +C++CY AN PG K+ I
Sbjct: 188 GMAPICGLCGMECRDGNAQILKDGFKVCSKCYANNDNKGEANIHPG-----DKKERIDNH 242
Query: 55 AKSDWTDKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMGPKEDKI 114
+ S WTD ETL LLE VL +G+DW ++ HV ++++ +CIAR +LPFGE +G K+
Sbjct: 243 SSSAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKL 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,758,368
Number of extensions: 326165
Number of successful extensions: 1217
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)