Os12g0176600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SWIRM domain containing protein.
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Os12g0176600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SWIRM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.62 | 0.381 | 8.83 | 1.35 | 0.361 | -1.17 | 0.147 | 1.02 | 0.165 | 11.2 | 22.1 | 1855 | -- | -- |
| 68.02 | 0.384 | 8.86 | 1.02 | 0.388 | -1.18 | 0.149 | -- | 0.0941 | 11.3 | 22.05 | 1786 | -- | -- |
| 65.71 | 0.378 | 8.83 | 1.36 | 0.361 | -1.17 | -- | 1.02 | 0.165 | 11.3 | 22.1 | 1855 | -- | -- |
| 67.77 | 0.383 | 8.87 | 0.975 | 0.381 | -1.18 | -- | -- | 0.0724 | 10.7 | 22.1 | 1479 | -- | -- |
| 69.33 | 0.388 | 8.85 | 1.24 | -- | -1.13 | -- | 0.928 | 0.133 | -- | 22.3 | 1018 | -- | -- |
| 118.47 | 0.51 | 8.96 | 0.542 | 0.397 | -- | 0.083 | -- | -0.316 | 11.1 | -- | -- | -- | -- |
| 118.5 | 0.51 | 8.96 | 0.545 | 0.396 | -- | -- | -- | -0.316 | 11.1 | -- | -- | -- | -- |
| 71.34 | 0.393 | 8.88 | 0.943 | -- | -1.16 | -- | -- | 0.0668 | -- | 22.19 | 992 | -- | -- |
| 90.09 | 0.442 | 8.9 | -- | 0.377 | -0.949 | -- | -- | -0.0765 | 10 | 22.4 | 1401 | -- | -- |
| 128.29 | 0.529 | 8.97 | 0.536 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 126.34 | 0.526 | 8.97 | -- | 0.391 | -- | -- | -- | -0.377 | 11 | -- | -- | -- | -- |
| 92 | 0.447 | 8.91 | -- | -- | -0.938 | -- | -- | -0.0884 | -- | 22.38 | 903 | -- | -- |
| 135.87 | 0.544 | 8.98 | -- | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 10 | 66.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 13 | 66.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 56 | 67.21 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 204 | 68.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 215 | 68.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 340 | 69.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 392 | 69.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 400 | 69.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 538 | 70.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 545 | 70.03 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 566 | 70.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 579 | 70.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 582 | 70.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 830 | 71.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 917 | 71.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 946 | 71.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 960 | 71.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |