BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0176600 Os12g0176600|Os12g0176600
(740 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808 494 e-140
AT2G33610.1 | chr2:14229023-14231149 FORWARD LENGTH=470 112 8e-25
AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987 112 8e-25
AT2G47620.1 | chr2:19532034-19534251 FORWARD LENGTH=513 86 5e-17
AT4G16420.1 | chr4:9262805-9265775 REVERSE LENGTH=488 52 1e-06
>AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808
Length = 807
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 283/637 (44%), Positives = 374/637 (58%), Gaps = 47/637 (7%)
Query: 81 AEVHPTAIERVSAFPPAFRRVVNRLHPSVLAVMXXXXXXXXXXXXXXXXXXXVPALENIS 140
EV + R+S FP +RVV R H SV+AV+ +PALENIS
Sbjct: 71 GEVVEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGETRGQGS---LPALENIS 127
Query: 141 HGQLQVLSSVLPDHPSLSNDPDKPSSYVCTPPLLMECRGVAKQFDGKLLMVPKHSDWFLP 200
GQLQ LS+V D L S+YV +PP +M+ GV K+F + ++P HSDWF P
Sbjct: 128 FGQLQALSTVPADSLDLERSDGSSSAYVISPPPIMDGEGVVKRFGDLVHVLPMHSDWFAP 187
Query: 201 MTVHRLERQVLPQFFSGKSPGHTPEKYIMLRNRVITTYLERPARRLAFSECQGLVTSTPE 260
TV RLERQV+PQFFSGKSP HTPE Y+ RN +++ Y+E P + L S+CQGLV +
Sbjct: 188 NTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDCQGLVDGV-D 246
Query: 261 LYDLSRIVRFLDAWGIINYLAAGSVQRGLRMAATLIREEPTGELHLMSAPLKSIDGLILF 320
+ D +R+ RFLD WGIINY A G + +RE+ GE+++ SA L SID LI F
Sbjct: 247 IEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNVPSAALTSIDSLIKF 306
Query: 321 DRPKCSVRAEDIASGASLSSSPGMENGDAGFDEKTLLERLSESFCSFCAQPLPSLHYESQ 380
D+P C + G SS P ++ GD+ + + E L +S C+ C++PLP+++++SQ
Sbjct: 307 DKPNCRHKG-----GEVYSSLPSLD-GDSPDLDIRIREHLCDSHCNHCSRPLPTVYFQSQ 360
Query: 381 KEADIALCSDCFHDARFVTGHSSLDFQRVXXXXXXXXXXXXSWTDQETFLLLEGIDKYKE 440
K+ DI LC DCFH RFV GHS LDF RV +WTDQET LLLE ++ Y E
Sbjct: 361 KKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNE 420
Query: 441 NWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENIKVPEASFSSKFWLMQNASGSVFKLPQ 500
NW +A+HVG+KSK QC+ HFLRLPVEDGLL+N++V + + + G+
Sbjct: 421 NWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTD----- 475
Query: 501 LFALGSLPQSGEAGD-----LPFINTANPVXXXXXXXXXXXXFRDDLQIAFLASSLGPRV 555
+ G LP E G LPF+ + NPV +AFLAS++GPRV
Sbjct: 476 --SNGDLPGYSEQGSDTEIKLPFVKSPNPVMAL---------------VAFLASAVGPRV 518
Query: 556 AASCASEALIVLTGGDSRISSIG-----NDVMGHAARPNCGDYLIPKINSSLAVS---SE 607
AASCA E+L VL+ D R+ S G ++ + G + N + A + +
Sbjct: 519 AASCAHESLSVLS-EDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQD 577
Query: 608 NVRHAARCGLSAAATKCKLFADQEEREIQRLSATIINHQLKRLELKLKQFADIETYLLRD 667
V A R GLSAAATK KLFAD EEREIQRLSA I+NHQLKR+ELKLKQFA+IET L+++
Sbjct: 578 KVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKE 637
Query: 668 SEQSERMRQGLQAQRIRMMSGLRLASPRGNTMASNPL 704
EQ E+ RQ A+R RM+S R SP G + +N L
Sbjct: 638 CEQVEKTRQRFSAERARMLSA-RFGSPGGISPQTNNL 673
>AT2G33610.1 | chr2:14229023-14231149 FORWARD LENGTH=470
Length = 469
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 114/508 (22%), Positives = 214/508 (42%), Gaps = 99/508 (19%)
Query: 189 LMVPKHSDWFLPMTVHRLERQVLPQFFSGKSPGHTPEKYIMLRNRVITTYLERPARRLAF 248
+ VP +S WF ++ E + LP+FF +S P+ Y+ LRN +I Y + R+++F
Sbjct: 48 IHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISF 107
Query: 249 SECQGLVTSTPELYDLSRIVRFLDAWGIINYLAAGSVQRGLRMAATLIREEPTGELHLMS 308
++ + + S ++ + R+ FLD+WG+INY ++ S +
Sbjct: 108 TDVRRTLVS--DVVSIRRVFDFLDSWGLINYNSSASAK---------------------- 143
Query: 309 APLKSIDGLILFDRPKCSVRAEDIASGASLSSSPGMENGDAGFDEKTLLERLSESFCSFC 368
PLK E+ +G S GDA + T ++ ++ C+ C
Sbjct: 144 -PLK----------------WEEKEAGKSA--------GDAASEPATTVKETAKRNCNGC 178
Query: 369 AQPLPSLHYESQKEADIALCSDCFHDARFVTGHSSLDFQRVXXXXXXXXXXXXSWTDQET 428
+ + S+ + + D+ LC+ C+ + + G +S +F+RV W+D+E
Sbjct: 179 -KAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRV----EISEESKPEWSDKEI 233
Query: 429 FLLLEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENIKVPEASFSSKFWLM 488
LLLE + Y ++W VA HV +++ C+ F++LP + V E+ +
Sbjct: 234 LLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQF-----VKESDSEDGLEMF 288
Query: 489 QNASGSVFKLPQLFAL---GSLPQSGEAGDLPFINTANPVXXXXXXXXXXXXFRDDLQIA 545
S +P+ + GS P P + +NP+ Q A
Sbjct: 289 DQIKDS--DIPESEGIDKDGSSPNK-RIKLTPLADASNPIMA---------------QAA 330
Query: 546 FLASSLGPRVAASCASEALIVLTGGDSRISSIGNDVMGHAAR-PNCGDYLIPKINSSLAV 604
FL++ G VA + A A+ L S + + +A+R PN D ++ A
Sbjct: 331 FLSALAGTNVAEAAARAAVRAL-------SDVDYEADKNASRDPNRQD-------ANAAS 376
Query: 605 SSENVRHAARCGLSAAATKCKLFADQEEREIQRLSATIINHQLKRLELKLKQFADIETYL 664
S E R+ + + A K ++EE E++ + ++K++ ++ F ++ +
Sbjct: 377 SGETTRNESERAWADA----KSLIEKEEHEVEGAIKETVEVEMKKIRDRIVHFEKLDLEM 432
Query: 665 LRDSEQSERMRQGLQAQRIRMMSGLRLA 692
R +Q E +R L ++ + R A
Sbjct: 433 ERSRKQLEEVRNLLFVDQLNIFFHTRKA 460
>AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987
Length = 986
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 138/297 (46%), Gaps = 26/297 (8%)
Query: 185 DGKLLMVPKHSDWFLPMTVHRLERQVLPQFFSGKSPGHTPEKYIMLRNRVITTYLERPAR 244
D + +VP H WF +H LE + LP FF+GK G T E Y +RN ++ + P
Sbjct: 141 DSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNI 200
Query: 245 RLAFSECQGLVTSTPELYDLSRIVRFLDAWGIINYLAAGSVQRGLRMAATLIREEPTGEL 304
++ + L E ++ FLD WG+IN+ G +T + G+
Sbjct: 201 QIELKDLTELEVGDSEAK--QEVMEFLDYWGLINFHPFPPTDTG----STASDHDDLGDK 254
Query: 305 HLMSAPLK--SIDGLI--LFDRPKCSVRAEDIASGASLSSSPGMENGDAGFDEKTLLERL 360
+ L +D L +P+ + +A + G+ DE LL++
Sbjct: 255 ESLLNSLYRFQVDEACPPLVHKPRFTAQA----------TPSGLFPDPMAADE--LLKQE 302
Query: 361 S---ESFCSFCAQPLPSLHYESQKEADIALCSDCFHDARFVTGHSSLDFQRVXXXXXXXX 417
E C+ C+ Y K+AD LC++CF+ +F + SS +
Sbjct: 303 GPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSSS-DFILMEPAEAPG 361
Query: 418 XXXXSWTDQETFLLLEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENI 474
WTDQET LLLE ++ +KENWN +AEHV TK+K QC+ HFL++P+ED L+ I
Sbjct: 362 VGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQI 418
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 623 KCKLFADQEEREIQRLSATII-NHQLKRLELKLKQFADIETYLLRDSEQSERMRQGLQAQ 681
K K A QEE +I++LS ++I QL +LE KL F + E+ +R EQ ER RQ L +
Sbjct: 845 KAKNLAKQEEDQIRQLSGSLIEKQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHE 904
Query: 682 RIRMMSGLRLASPRGNTMASNPLSQ-----ANI--RPP 712
R ++++ P ++ AS P ++ AN+ RPP
Sbjct: 905 RAQIIAARLGVPPSMSSKASLPTNRIAANFANVAQRPP 942
>AT2G47620.1 | chr2:19532034-19534251 FORWARD LENGTH=513
Length = 512
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 31/291 (10%)
Query: 187 KLLMVPKHSDWFLPMTVHRLERQVLPQFFSGKSPGHTPEKYIMLRNRVITTYLERPARRL 246
+L +P S WFL +H +ER+ +FF+ S TP+ Y R+ +I + E RRL
Sbjct: 11 ELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRL 70
Query: 247 AFSECQGLVTSTPELYDLSRIVRFLDAWGIINYLAAGSVQRGLRM----AATLIREEPTG 302
F+ + + L L ++ FL+ WG+IN+ + S+++ + A + + P G
Sbjct: 71 TFTSVRKFLVGDVNL--LQKVFLFLEKWGLINF--SSSLKKNDHLLSVDNAKIEQGTPAG 126
Query: 303 ELHLMSAP--LKSIDGLILFDRPKCSVRAEDIASGASLSSSPGMENGDAGFDEKTLLERL 360
+ + + P L+ I L + E + +G + P D D K L
Sbjct: 127 -IRVTATPNSLRPITAPPLVE--------ERVETG--IKVPPLTSYSDVFSDLKKPDHVL 175
Query: 361 SESFCSFCAQPLPSLHYESQKEADIALCSDCFHDARFVTGHSSLDFQRVXXXXXXXXXXX 420
C+ C + S Y+ K + +C CF + + +++ DF+ +
Sbjct: 176 ---VCAHCGERCDSPFYQHNK-GIVNICEKCFKNGNYGENNTADDFKLIGNSAAAV---- 227
Query: 421 XSWTDQETFLLLEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLL 471
WT++E LLLE + K+ ++W +++ V TKS++ C+ + LP + L+
Sbjct: 228 --WTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLM 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 44/62 (70%)
Query: 625 KLFADQEEREIQRLSATIINHQLKRLELKLKQFADIETYLLRDSEQSERMRQGLQAQRIR 684
K+ ADQEERE+++L+AT+I QLK+L+ KLK D+E+ + + + E +++ + +R+
Sbjct: 433 KILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVS 492
Query: 685 MM 686
++
Sbjct: 493 VL 494
>AT4G16420.1 | chr4:9262805-9265775 REVERSE LENGTH=488
Length = 487
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 322 RPKCSVRAEDIASGASLSSSPGMENGDAGFDEKTLLERLSESFCSFCAQPLP-SLHYESQ 380
R + A ++ + S S PG E G + C +C + + + +
Sbjct: 17 RTRKKKNAANVENFESTSLVPGAEGG-------------GKYNCDYCQKDITGKIRIKCA 63
Query: 381 KEADIALCSDCFHDARFVTGHSSLDFQRVXXXXXXXXXXXXSWTDQETFLLLEGIDKYK- 439
D LC +C +T H RV W+ + LLLEG++ Y
Sbjct: 64 VCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFPLICP-DWSADDEMLLLEGLEIYGL 122
Query: 440 ENWNAVAEHVGTKSKIQCLHHF 461
NW VAEHVGTKSK QCL H+
Sbjct: 123 GNWAEVAEHVGTKSKEQCLEHY 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,811,109
Number of extensions: 543856
Number of successful extensions: 1382
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1372
Number of HSP's successfully gapped: 10
Length of query: 740
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 634
Effective length of database: 8,200,473
Effective search space: 5199099882
Effective search space used: 5199099882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)