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Os04g0480300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SWIRM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0134) R2 : 0.591
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.871 (0.034) R2dC : 0.591 R2C : 0.591
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00587 (0.0282) R2dN8 : 5.03e-05 R2N8 : -1.06e-05
σ : 0.253
deviance : 29.16
__
_____
C
peak time of C : 15.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.95 0.21 11.5 0.412 0.363 -0.896 -0.563 -0.112 0.0117 11.8 0.54 675 -- --
19.91 0.208 11.5 0.409 0.329 -0.907 -0.553 -- 0.0108 11.5 0.5731 655 -- --
21.21 0.215 11.5 0.388 0.327 -0.921 -- 0.107 0.0118 11.3 0.3554 652 -- --
21.19 0.214 11.5 0.369 0.337 -1.02 -- -- 0.000705 10.3 0.54 655 -- --
21.7 0.217 11.5 0.382 -- -0.862 -- 0.364 0.00809 -- 0.64 482 -- --
23.08 0.225 11.5 0.47 0.881 -- -0.365 -- 0.0479 15.7 -- -- -- --
23.47 0.227 11.5 0.465 0.88 -- -- -- 0.0459 15.7 -- -- -- --
22.1 0.219 11.5 0.39 -- -0.865 -- -- 0.00998 -- 0.646 487 -- --
24.64 0.231 11.5 -- 0.37 -1.14 -- -- 0.00598 9.58 0.0001082 655 -- --
66.34 0.381 11.5 0.428 -- -- -- -- 0.0224 -- -- -- -- --
29.16 0.253 11.5 -- 0.871 -- -- -- -0.00587 15.7 -- -- -- --
25.99 0.237 11.5 -- -- -0.886 -- -- -0.0392 -- 1.086e-07 495 -- --
71.18 0.394 11.5 -- -- -- -- -- -0.025 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.74 wind 5.0 270 < th dose independent rect. 14 11
2 17.77 humidity 50.0 270 > th dose independent rect. 10 10
5 18.01 humidity 50.0 270 > th dose independent rect. 15 14
9 18.26 temperature 30.0 270 < th dose independent rect. 14 16
15 18.33 radiation 1.0 720 < th dose dependent rect. 17 12
17 18.35 radiation 1.0 270 < th dose independent rect. 23 22
18 18.36 wind 9.0 270 < th dose dependent rect. 14 11
20 18.41 radiation 1.0 270 < th dose dependent rect. 23 22
23 18.46 radiation 1.0 720 < th dose dependent rect. 17 4
25 18.47 radiation 40.0 270 < th dose dependent rect. 15 14
27 18.49 wind 1.0 270 > th dose independent rect. 10 11
44 18.56 temperature 30.0 90 < th dose dependent rect. 15 16
46 18.57 temperature 15.0 270 > th dose independent rect. 10 10
54 18.59 radiation 1.0 270 < th dose dependent rect. 1 19
62 18.64 humidity 50.0 270 > th dose independent rect. 21 13
66 18.65 wind 9.0 270 < th dose independent rect. 21 13
67 18.65 temperature 10.0 270 > th dose independent rect. 21 13
68 18.65 atmosphere 995.0 270 > th dose independent rect. 21 13
76 18.65 temperature 10.0 270 > th dose dependent rect. 6 19
78 18.67 radiation 40.0 270 < th dose independent rect. 6 7
81 18.68 radiation 40.0 270 < th dose independent rect. 20 14
88 18.71 radiation 20.0 270 < th dose independent rect. 15 14
90 18.72 precipitation 0.1 270 < th dose independent rect. 21 13
93 18.72 precipitation 0.1 270 < th dose dependent rect. 21 13
95 18.73 atmosphere 1015.0 270 < th dose independent rect. 10 10
103 18.75 temperature 30.0 270 < th dose independent rect. 20 14
104 18.75 humidity 70.0 10 > th dose independent rect. 16 15
106 18.75 radiation 1.0 270 < th dose independent rect. 1 19
116 18.79 radiation 1.0 270 < th dose independent rect. 1 17
118 18.80 atmosphere 995.0 270 > th dose independent rect. 10 10
119 18.80 precipitation 0.1 270 < th dose independent rect. 10 10
121 18.80 precipitation 0.1 270 < th dose dependent rect. 10 10
130 18.83 temperature 30.0 270 < th dose independent rect. 11 9
140 18.85 radiation 1.0 90 > th dose independent rect. 7 12
176 18.92 wind 7.0 270 < th dose independent rect. 6 19
177 18.92 temperature 30.0 90 < th dose dependent rect. 3 4
199 18.98 wind 9.0 270 < th dose independent rect. 10 10
204 18.99 radiation 40.0 270 < th dose dependent rect. 6 7
209 19.00 humidity 50.0 270 > th dose independent rect. 1 19
217 19.02 radiation 1.0 720 < th dose independent rect. 16 5
226 19.03 radiation 1.0 270 > th dose independent sin 3 NA
236 19.04 temperature 30.0 270 < th dose dependent rect. 1 4
253 19.07 radiation 1.0 720 < th dose independent rect. 16 14
255 19.08 wind 1.0 270 > th dose independent rect. 3 1
262 19.09 precipitation 0.1 270 < th dose independent rect. 3 1
266 19.09 precipitation 0.1 270 < th dose dependent rect. 3 1
270 19.10 wind 1.0 270 > th dose independent rect. 1 4
275 19.10 radiation 1.0 270 > th dose independent rect. 17 22
276 19.10 wind 9.0 270 < th dose independent rect. 4 23
297 19.13 precipitation 0.1 90 < th dose independent rect. 7 20
300 19.13 precipitation 0.1 90 < th dose dependent rect. 7 20
310 19.15 wind 7.0 270 < th dose independent rect. 3 1
318 19.15 humidity 50.0 270 > th dose independent rect. 24 21
322 19.16 precipitation 0.1 90 < th dose independent rect. 3 4
329 19.16 precipitation 0.1 90 < th dose dependent rect. 3 4
332 19.17 temperature 10.0 270 > th dose independent rect. 3 1
334 19.17 temperature 30.0 270 < th dose independent rect. 3 1
335 19.17 humidity 50.0 270 > th dose independent rect. 3 1
338 19.17 atmosphere 995.0 270 > th dose independent rect. 3 1
339 19.17 atmosphere 1010.0 270 < th dose independent rect. 3 1
341 19.17 radiation 1.0 270 < th dose independent rect. 3 1
346 19.17 wind 5.0 90 < th dose independent rect. 3 4
352 19.17 temperature 10.0 270 > th dose independent rect. 4 23
354 19.17 radiation 1.0 270 < th dose dependent rect. 3 1
362 19.18 humidity 70.0 90 > th dose independent rect. 3 4
363 19.18 radiation 20.0 90 < th dose independent rect. 3 4
373 19.19 radiation 40.0 90 < th dose dependent rect. 3 4
377 19.20 temperature 30.0 270 < th dose dependent rect. 3 1
381 19.21 temperature 10.0 90 > th dose independent rect. 3 4
383 19.21 temperature 30.0 90 < th dose independent rect. 3 4
384 19.21 humidity 50.0 90 > th dose independent rect. 3 4
386 19.21 atmosphere 995.0 90 > th dose independent rect. 3 4
387 19.21 atmosphere 1015.0 90 < th dose independent rect. 3 4
392 19.21 temperature 10.0 90 > th dose independent rect. 7 20
400 19.22 precipitation 0.1 270 < th dose independent rect. 5 21
403 19.22 precipitation 0.1 270 < th dose dependent rect. 5 21
416 19.25 radiation 1.0 270 < th dose independent rect. 1 5
417 19.25 precipitation 0.1 270 < th dose independent rect. 1 5
421 19.25 radiation 10.0 270 < th dose dependent rect. 1 5
422 19.25 precipitation 0.1 270 < th dose dependent rect. 1 5
437 19.27 radiation 1.0 90 > th dose independent sin 0 NA
447 19.27 precipitation 0.1 270 < th dose independent rect. 4 23
449 19.27 precipitation 0.1 270 < th dose dependent rect. 4 23
450 19.28 atmosphere 1010.0 270 < th dose independent rect. 1 5
463 19.29 wind 7.0 270 < th dose independent rect. 1 5
465 19.29 temperature 10.0 270 > th dose independent rect. 1 5
467 19.29 temperature 30.0 270 < th dose independent rect. 1 5
468 19.29 humidity 50.0 270 > th dose independent rect. 1 5
471 19.29 atmosphere 995.0 270 > th dose independent rect. 1 5
503 19.31 wind 9.0 90 < th dose dependent rect. 7 20
512 19.32 radiation 1.0 270 < th dose dependent rect. 2 3
521 19.33 precipitation 0.1 270 < th dose independent rect. 15 10
525 19.33 precipitation 0.1 270 < th dose dependent rect. 15 10
540 19.34 radiation 1.0 270 < th dose independent rect. 2 3
555 19.34 temperature 10.0 270 > th dose independent rect. 5 21
588 19.35 wind 1.0 270 > th dose dependent rect. 12 8
589 19.36 precipitation 0.1 10 < th dose independent rect. 3 4
597 19.36 precipitation 0.1 10 < th dose dependent rect. 3 4
602 19.36 temperature 10.0 270 > th dose dependent rect. 20 14
608 19.37 precipitation 0.1 10 < th dose independent rect. 7 20
609 19.37 radiation 1.0 720 < th dose dependent sin 13 NA
610 19.37 temperature 10.0 270 > th dose dependent rect. 20 5
618 19.37 precipitation 0.1 10 < th dose dependent rect. 7 20
625 19.38 radiation 40.0 90 < th dose independent rect. 7 20
627 19.38 radiation 40.0 10 < th dose dependent rect. 3 5
640 19.39 wind 9.0 90 < th dose dependent rect. 3 4
655 19.40 humidity 50.0 90 > th dose dependent rect. 3 4
685 19.43 radiation 1.0 720 > th dose independent rect. 13 5
718 19.44 wind 9.0 10 < th dose independent rect. 7 20
724 19.45 wind 9.0 1440 < th dose independent rect. 4 4
725 19.45 temperature 10.0 1440 > th dose independent rect. 4 4
728 19.45 temperature 30.0 1440 < th dose independent rect. 4 4
732 19.45 humidity 50.0 1440 > th dose independent rect. 4 4
737 19.45 atmosphere 995.0 1440 > th dose independent rect. 4 4
738 19.45 atmosphere 1015.0 1440 < th dose independent rect. 4 4
742 19.45 humidity 50.0 270 > th dose independent rect. 5 10
750 19.45 temperature 10.0 1440 > th dose independent rect. 8 20
775 19.46 temperature 10.0 270 > th dose independent rect. 5 10
776 19.46 atmosphere 1015.0 270 < th dose independent rect. 5 10
777 19.46 temperature 15.0 270 > th dose independent rect. 1 14
778 19.46 temperature 10.0 270 > th dose independent rect. 15 14
784 19.46 temperature 15.0 90 > th dose dependent rect. 22 5
796 19.47 wind 9.0 270 < th dose dependent rect. 3 1
806 19.48 precipitation 0.1 270 < th dose independent rect. 5 10
814 19.48 temperature 10.0 270 > th dose dependent rect. 16 9
815 19.48 precipitation 0.1 270 < th dose dependent rect. 5 10
845 19.50 atmosphere 995.0 270 > th dose independent rect. 5 10
851 19.50 humidity 50.0 270 > th dose dependent rect. 3 1
863 19.51 radiation 1.0 270 < th dose dependent sin 2 NA
896 19.53 temperature 30.0 10 < th dose independent rect. 12 19
924 19.54 wind 1.0 30 > th dose independent rect. 14 17
940 19.55 wind 9.0 270 < th dose independent rect. 5 10
951 19.55 humidity 50.0 90 > th dose dependent rect. 15 16
953 19.55 radiation 40.0 90 < th dose dependent rect. 8 19
976 19.57 atmosphere 995.0 270 > th dose independent rect. 15 14