BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0480300 Os04g0480300|AK102453
(560 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0480300 SWIRM domain containing protein 966 0.0
Os02g0194000 Myb, DNA-binding domain containing protein 81 2e-15
AK110000 79 1e-14
Os11g0183700 SWIRM domain containing protein 67 4e-11
>Os04g0480300 SWIRM domain containing protein
Length = 560
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/540 (87%), Positives = 470/540 (87%)
Query: 21 RELYTIPASSGWFQWDEIHETERRALPEXXXXXXXXXXXTASRNPRIYREYRDYIISRYR 80
RELYTIPASSGWFQWDEIHETERRALPE TASRNPRIYREYRDYIISRYR
Sbjct: 21 RELYTIPASSGWFQWDEIHETERRALPEFFGGAGGSGFGTASRNPRIYREYRDYIISRYR 80
Query: 81 EDTSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSXXXXXXXXXXXXXXXXXXXXX 140
EDTSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFS
Sbjct: 81 EDTSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSASPSRPEAQQQQRQTEAEAVV 140
Query: 141 XXPVGLQVTPRPPPSYFAXXXXXXXXXXXFRLPPLTSYSDVFGEWAPGMAPICGLCGMEC 200
PVGLQVTPRPPPSYFA FRLPPLTSYSDVFGEWAPGMAPICGLCGMEC
Sbjct: 141 EAPVGLQVTPRPPPSYFAEEKGGGGNENGFRLPPLTSYSDVFGEWAPGMAPICGLCGMEC 200
Query: 201 RDGNAQILKDGFKVCSKCYANNDNKGEANIHPGDKKERIDNHSSSAWTDAETLLLLEGVL 260
RDGNAQILKDGFKVCSKCYANNDNKGEANIHPGDKKERIDNHSSSAWTDAETLLLLEGVL
Sbjct: 201 RDGNAQILKDGFKVCSKCYANNDNKGEANIHPGDKKERIDNHSSSAWTDAETLLLLEGVL 260
Query: 261 KHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRLHKIQTTDGKVNKST 320
KHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRLHKIQTTDGKVNKST
Sbjct: 261 KHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRLHKIQTTDGKVNKST 320
Query: 321 VKESSSQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFSSIDITVSLMEQLAHLTTSTS 380
VKESSSQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFSSIDITVSLMEQLAHLTTSTS
Sbjct: 321 VKESSSQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFSSIDITVSLMEQLAHLTTSTS 380
Query: 381 PXXXXXXXXXXIKALGNENPQARRAFQLSEKEYQTRAFSSNHARQSDDVGGGDRDVEMHG 440
P IKALGNENPQARRAFQLSEKEYQTRAFSSNHARQSDDVGGGDRDVEMHG
Sbjct: 381 PDVVAAAADAAIKALGNENPQARRAFQLSEKEYQTRAFSSNHARQSDDVGGGDRDVEMHG 440
Query: 441 HPDKKQGKMFISTTYQVXXXXXXXXXXXXXXXKMLADQEEREMELLMASIIETQLKKIQY 500
HPDKKQGKMFISTTYQV KMLADQEEREMELLMASIIETQLKKIQY
Sbjct: 441 HPDKKQGKMFISTTYQVRAAVATSIGVAAARAKMLADQEEREMELLMASIIETQLKKIQY 500
Query: 501 KIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFETGVPISRDEVLIKLFQNKPNL 560
KIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFETGVPISRDEVLIKLFQNKPNL
Sbjct: 501 KIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFETGVPISRDEVLIKLFQNKPNL 560
>Os02g0194000 Myb, DNA-binding domain containing protein
Length = 302
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 188 GMAPICGLCGMECRDGNAQILKDGFKVCSKCYANNDNKGEANIHPG-----DKKERIDNH 242
G +CGL C K +C++CY AN PG K+ I
Sbjct: 8 GCRTVCGLAYFSCE-------KADISLCARCYVR------ANYRPGLTSADFKRIEITED 54
Query: 243 SSSAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKL 302
+ S WTD ETL LLE VL +G+DW ++ HV ++++ +CIAR +LPFGE +G K+
Sbjct: 55 AKSDWTDKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIARFTRLPFGEQFMGPKEDKI 114
>AK110000
Length = 1068
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 26 IPASSGWFQWDEIHETERRALPEXXXXXXXXXXXTASRNPRIYREYRDYIISRYREDTSR 85
IP+ S WF I+ E+R+LPE S+ P IY++YRD++I+ YR + S
Sbjct: 479 IPSYSTWFDMSTINAIEKRSLPEFFNNKNR------SKTPSIYKDYRDFMINTYRLNPSE 532
Query: 86 RLTFTEVRKALVGDVTLLRKLFAFLDSSGLINF 118
LTFT R+ L GDV + ++ AFL+ GLIN+
Sbjct: 533 YLTFTACRRNLAGDVCAIMRVHAFLEQWGLINY 565
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 193 CGLCGMEC-RDGNAQILKDGFKVCSKCYANNDNKGEANIHPGD---KKERIDNHSSSA-- 246
C CG +C R I + +C+ CY + + ++++ GD ++ + S
Sbjct: 672 CDTCGSDCTRVRYHSIKAKNYSLCASCYL--EGRFPSSMYSGDFVRMEDSVLKQSGGVTG 729
Query: 247 --------WTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHML 295
WTDAETL LLEG+ DDW +A HV T+++ +CI + IQLP + L
Sbjct: 730 GAAAAQDDWTDAETLRLLEGLEMFDDDWSAVANHVGTRSREQCITKFIQLPIEDGFL 786
>Os11g0183700 SWIRM domain containing protein
Length = 784
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 193 CGLCGMECRDGNAQILKDG-FKVCSKCYANNDNKGEANIHPGDKKERIDN------HSSS 245
C C + Q LK+ +CS C+ + H +RID +
Sbjct: 360 CSYCLQPLTSLHYQSLKEADIALCSDCF---HDARYITGHSSLDFQRIDGDNDRSENDGD 416
Query: 246 AWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTV 298
+WTD ETLLLLEG+ K+ D+W+ IA+HV TK+K++CI I+LP + +L +
Sbjct: 417 SWTDQETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENI 469
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,405,234
Number of extensions: 625871
Number of successful extensions: 1623
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1621
Number of HSP's successfully gapped: 5
Length of query: 560
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 454
Effective length of database: 11,501,117
Effective search space: 5221507118
Effective search space used: 5221507118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)