BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0480300 Os04g0480300|AK102453
(560 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47620.1 | chr2:19532034-19534251 FORWARD LENGTH=513 291 8e-79
AT2G33610.1 | chr2:14229023-14231149 FORWARD LENGTH=470 146 2e-35
AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987 80 4e-15
AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808 78 2e-14
>AT2G47620.1 | chr2:19532034-19534251 FORWARD LENGTH=513
Length = 512
Score = 291 bits (744), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 191/543 (35%), Positives = 277/543 (51%), Gaps = 53/543 (9%)
Query: 22 ELYTIPASSGWFQWDEIHETERRALPEXXXXXXXXXXXTASRNPRIYREYRDYIISRYRE 81
ELYTIPA S WF WD+IHE ERR E + +R P++Y+EYRD+II+++RE
Sbjct: 11 ELYTIPAQSSWFLWDDIHEIERREFAEFFTES------SITRTPKVYKEYRDFIINKFRE 64
Query: 82 DTSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSXXXXXXXXXXXXXXXXXXXXXX 141
DT RRLTFT VRK LVGDV LL+K+F FL+ GLINFS
Sbjct: 65 DTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQGT- 123
Query: 142 XPVGLQVTPRPPP--SYFAXXXXXXXXXXXFRLPPLTSYSDVFGEWA-PGMAPICGLCGM 198
P G++VT P A ++PPLTSYSDVF + P +C CG
Sbjct: 124 -PAGIRVTATPNSLRPITAPPLVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGE 182
Query: 199 ECRDGNAQILKDGFKVCSKCYANNDNKGEANIHPGDKKERIDNHSSSAWTDAETLLLLEG 258
C Q K +C KC+ N N GE N D + I N +++ WT+ E LLLLE
Sbjct: 183 RCDSPFYQHNKGIVNICEKCFKNG-NYGENNT--ADDFKLIGNSAAAVWTEEEILLLLES 239
Query: 259 VLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRLHKIQTTDGKVNK 318
VLKHGDDW+LI+Q V TK++ +CI++LI+LPFGE ++G+ +G+L N
Sbjct: 240 VLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRL--------------NP 285
Query: 319 STVKESSSQPTETVDDMQIDGNEDGADKSV---------EEHPTKHRRLFSSIDITVSLM 369
S + E E + +Q DG E ++ +E P K +R+ + SLM
Sbjct: 286 SILTED-----ENTEQVQTDGQEHEETETREEKEDRVNEDEPPAKRKRVALISEGDSSLM 340
Query: 370 EQLAHLTTSTSPXXXXXXXXXXIKALGNENPQARRAFQLSEKEYQTRAFSSNHARQSDDV 429
+Q+A + + P + AL +E + F + +++ + D
Sbjct: 341 KQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFD-----------TDDYSNFTVDR 389
Query: 430 GGGDRDVEMHGHPDKKQGKMFISTTYQVXXXXXXXXXXXXXXXKMLADQEEREMELLMAS 489
G++D +M ++K G + ++ K+LADQEEREME L A+
Sbjct: 390 ANGEKDTDMEEQQEEKDGPQGLPVALRIRASVATALGAAAAQAKILADQEEREMEQLAAT 449
Query: 490 IIETQLKKIQYKIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFETGVPISRDEV 549
+IE QLKK+Q K+K ++LE IMD+E ++ +K +++ E VL+ AF +G+ D
Sbjct: 450 VIEQQLKKLQSKLKFLDDLESIMDEEEKVIEGVKETIIQERVSVLQCAFRSGITKRWDHT 509
Query: 550 LIK 552
+K
Sbjct: 510 YVK 512
>AT2G33610.1 | chr2:14229023-14231149 FORWARD LENGTH=470
Length = 469
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/505 (24%), Positives = 212/505 (41%), Gaps = 112/505 (22%)
Query: 26 IPASSGWFQWDEIHETERRALPEXXXXXXXXXXXTASRNPRIYREYRDYIISRYREDTSR 85
+P+ S WF W +I++ E R+LPE ++S+NP+ Y R+ II +YR+D R
Sbjct: 50 VPSYSSWFSWTDINDCEVRSLPEFFDSR------SSSKNPKFYLYLRNSIIKQYRDDHPR 103
Query: 86 RLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSXXXXXXXXXXXXXXXXXXXXXXXPVG 145
+++FT+VR+ LV DV +R++F FLDS GLIN++ P+
Sbjct: 104 KISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYN-----------------SSASAKPLK 146
Query: 146 LQVTPRPPPSYFAXXXXXXXXXXXFRLPPLTSYSDVFGEWAPGMAPICGLCGMECRDGNA 205
+ + A P T+ + G IC + C
Sbjct: 147 WEEKEAGKSAGDAASE------------PATTVKETAKRNCNGCKAICSIACFACD---- 190
Query: 206 QILKDGFKVCSKCYANNDNKGEANIHPGDKKERIDNHSSSAWTDAETLLLLEGVLKHGDD 265
K +C++CY ++ + N K+ I S W+D E LLLLE V+ +GDD
Sbjct: 191 ---KYDLTLCARCYVRSNYRVGINSSEF-KRVEISEESKPEWSDKEILLLLEAVMHYGDD 246
Query: 266 WDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRLHKIQTTDGKVNKSTVKESS 325
W +A HV + + +C+++ ++LPFGE + + + DG +K+S
Sbjct: 247 WKKVASHVIGRTEKDCVSQFVKLPFGEQFVKESDSE-----------DGLEMFDQIKDSD 295
Query: 326 SQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFSSIDITVSLMEQLAHLTTSTSPXXXX 385
+E +D +DG+ P K +L D + +M Q A L+
Sbjct: 296 IPESEGID-------KDGS------SPNKRIKLTPLADASNPIMAQAAFLS--------- 333
Query: 386 XXXXXXIKALGNEN----PQARRAFQLSEKEYQTRAFSSNHARQSDDVGGGDRDVEMHGH 441
AL N LS+ +Y+ N +R D D + G
Sbjct: 334 --------ALAGTNVAEAAARAAVRALSDVDYEA---DKNASR---DPNRQDANAASSGE 379
Query: 442 PDKKQGKMFISTTYQVXXXXXXXXXXXXXXXKMLADQEEREMELLMASIIETQLKKIQYK 501
+ + + + K L ++EE E+E + +E ++KKI+ +
Sbjct: 380 TTRNESERAWADA------------------KSLIEKEEHEVEGAIKETVEVEMKKIRDR 421
Query: 502 IKHFEELELIMDQEYATLQQMKSSL 526
I HFE+L+L M++ L+++++ L
Sbjct: 422 IVHFEKLDLEMERSRKQLEEVRNLL 446
>AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987
Length = 986
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 32/333 (9%)
Query: 23 LYTIPASSGWFQWDEIHETERRALPEXXXXXXXXXXXTASRNPRIYREYRDYIISRYRED 82
++ +P GWF W++IH E R+LP R +YRE R++I+ ++ +
Sbjct: 144 VHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLE------GRTSEVYREIRNWIMGKFHSN 197
Query: 83 TSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSXXXXXXXXXXXXXXXXXXXXXXX 142
+ ++ ++ + VGD +++ FLD GLINF
Sbjct: 198 PNIQIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESL 257
Query: 143 PVGL---QVTPRPPPSYFAXXXXXXXXXXXFRLPPLTSYSDVFGEWAPGMAPICGLCGME 199
L QV PP P+ + ++ + P + C C +
Sbjct: 258 LNSLYRFQVDEACPPLVHKPRFTAQATPSGLFPDPMAA-DELLKQEGPAVEYHCNSCSAD 316
Query: 200 CRDGNAQILKDG-FKVCSKCYANNDNKGEAN----------IHPGDKKERIDNHSSSAWT 248
C K F +C++C+ N G+ + + P + S WT
Sbjct: 317 CSRKRYHCPKQADFDLCTECF----NSGKFSSDMSSSDFILMEPAEAP----GVGSGKWT 368
Query: 249 DAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRLHK 308
D ETLLLLE + ++W+ IA+HV TK K++C+ +Q+P + L ++ K + + K
Sbjct: 369 DQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYK--DPISK 426
Query: 309 IQTTDGKVNKSTVKESSSQPTETVDDMQIDGNE 341
TTD V+K P E + ++D +E
Sbjct: 427 -DTTDLAVSKDDNSVLKDAPEEAENKKRVDEDE 458
>AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808
Length = 807
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 126/305 (41%), Gaps = 46/305 (15%)
Query: 247 WTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNGKLDNRL 306
WTD ETLLLLE V + ++W IA HV +K+K++CI ++LP +G LDN
Sbjct: 403 WTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLP-------VEDGLLDN-- 453
Query: 307 HKIQTTDGKVNKSTVKESSSQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFSSIDITV 366
V S V ++ PT D D N D S + T+ + F +
Sbjct: 454 ---------VEVSGVT-NTENPTNGYDHKGTDSNGDLPGYSEQGSDTEIKLPF--VKSPN 501
Query: 367 SLMEQLAHLTTSTSPXXXXXXXXXXIKALG------NENPQARRAFQLSEKEYQTRAFSS 420
+M +A L ++ P + L +E Q + A L + Q
Sbjct: 502 PVMALVAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQ-----Q 556
Query: 421 NHARQSDDVGGGDRDVEMHGHPDKKQGKMFISTTYQVXXXXXXXXXXXXXXXKMLADQEE 480
+ A ++ G + + P K V K+ AD EE
Sbjct: 557 DGAHKTSSQNGAEAQTPL---PQDK-----------VMAAFRAGLSAAATKAKLFADHEE 602
Query: 481 REMELLMASIIETQLKKIQYKIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFET 540
RE++ L A+I+ QLK+++ K+K F E+E ++ +E +++ + E ++L F +
Sbjct: 603 REIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGS 662
Query: 541 GVPIS 545
IS
Sbjct: 663 PGGIS 667
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 23 LYTIPASSGWFQWDEIHETERRALPEXXXXXXXXXXXTASRNPRIYREYRDYIISRYRED 82
++ +P S WF + + ER+ +P+ + + P Y E+R+ I+S+Y E+
Sbjct: 175 VHVLPMHSDWFAPNTVDRLERQVVPQFFSGK------SPNHTPESYMEFRNAIVSKYVEN 228
Query: 83 TSRRLTFTEVRKALVG-DVTLLRKLFAFLDSSGLINF 118
+ LT ++ + + G D+ ++F FLD G+IN+
Sbjct: 229 PEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINY 265
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,523,267
Number of extensions: 410398
Number of successful extensions: 1325
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1315
Number of HSP's successfully gapped: 7
Length of query: 560
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 456
Effective length of database: 8,255,305
Effective search space: 3764419080
Effective search space used: 3764419080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)