BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0193100 Os02g0193100|AK109089
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0193100 Conserved hypothetical protein 267 4e-72
Os02g0193200 Conserved hypothetical protein 113 1e-25
AK109866 112 2e-25
Os02g0193300 Conserved hypothetical protein 110 7e-25
Os06g0625000 Conserved hypothetical protein 106 1e-23
Os09g0493000 Conserved hypothetical protein 64 9e-11
>Os02g0193100 Conserved hypothetical protein
Length = 209
Score = 267 bits (682), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/209 (71%), Positives = 149/209 (71%)
Query: 1 MGSKLSCIYRPESDIVVESEXXXXXXXXXRVIAADGSLRELPASPCVAVVSDVLGGGDDA 60
MGSKLSCIYRPESDIVVESE RVIAADGSLRELPASPCVAVVSDVLGGGDDA
Sbjct: 1 MGSKLSCIYRPESDIVVESEAPAPPPPPARVIAADGSLRELPASPCVAVVSDVLGGGDDA 60
Query: 61 ASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADMGRLAVRASLAL 120
ASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADMGRLAVRASLAL
Sbjct: 61 ASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADMGRLAVRASLAL 120
Query: 121 VGERPXXXXXXXXXXXXXXXXXVHVMPAQAQSRXXXXXXXXXXFNEKLNEQTLGVFAVFX 180
VGERP VHVMPAQAQSR FNEKLNEQTLGVFAVF
Sbjct: 121 VGERPQRRRRHRQGGGKKQKKKVHVMPAQAQSRDDGDGDVDGVFNEKLNEQTLGVFAVFL 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXLVEEEA 209
LVEEEA
Sbjct: 181 SPARGAAPAAAAAARSPLKRALSLVEEEA 209
>Os02g0193200 Conserved hypothetical protein
Length = 200
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 73/109 (66%), Gaps = 8/109 (7%)
Query: 1 MGSKLSCIYRPESDIVVESEXXXXXXXXXRVIAADGSLRELPASPCVAVVSDVLGGGDDA 60
MG KLSCI S RVI ADGSL+EL S VA DVL G +
Sbjct: 1 MGLKLSCI-----SCRRRSSSHQPAPAPARVITADGSLKELAVSSAVA---DVLRGEGEG 52
Query: 61 ASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADM 109
SFFVCNSDALYF+++PPAL+PGE LRPG++YFVLP AMLG+PLS+ADM
Sbjct: 53 RSFFVCNSDALYFNEQPPALAPGEALRPGQIYFVLPAAMLGQPLSTADM 101
>AK109866
Length = 200
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 97/177 (54%), Gaps = 16/177 (9%)
Query: 1 MGSKLSCIYRPESDIVVESEXXXXXXXXXRVIAADGSLRELPAS--PCVAVVSDVLGGGD 58
MGS LSC +R + + +VIAADGSL E+ A+ C VSDVLGG
Sbjct: 1 MGSGLSCNHRSST---LLRHHQPAAAPPAQVIAADGSLTEVAAAAASCPVSVSDVLGG-- 55
Query: 59 DAASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADMGRLAVRASL 118
+A F+C+SDALYFD PAL GE LRPG++YF+LP +MLGRPLS DM LAVRAS
Sbjct: 56 NAGRLFLCSSDALYFDVDVPALDGGELLRPGQIYFLLPVSMLGRPLSGVDMAALAVRASD 115
Query: 119 ALVGE-RPXXXXXXXXXXXXXXXXXVHVMPAQAQSRXXXXXXXXXXFNEKLNEQTLG 174
ALV RP V +MP A + NEKLNE+TLG
Sbjct: 116 ALVARARP-------RHQRGGGVKKVRIMPMLA-ANGCGGDDRDGEINEKLNERTLG 164
>Os02g0193300 Conserved hypothetical protein
Length = 192
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 76/109 (69%), Gaps = 12/109 (11%)
Query: 1 MGSKLSCIYRPESDIVVESEXXXXXXXXXRVIAADGSLRELPASPCVAVVSDVLGGGDDA 60
MG KLSCI R V RVIAADGSL+EL A+ AV +DVL G +
Sbjct: 1 MGLKLSCISRRRGSPV---------PAPARVIAADGSLKELHAAASPAV-ADVLRG--EG 48
Query: 61 ASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADM 109
SFFVCNSD LYF+++PPA++PGE LRPG++YFVLP AMLG+PLS+ADM
Sbjct: 49 ESFFVCNSDTLYFNEQPPAMAPGEALRPGQIYFVLPAAMLGQPLSTADM 97
>Os06g0625000 Conserved hypothetical protein
Length = 158
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 7/123 (5%)
Query: 1 MGSKLSCIYRPESDIVVESEXXXXXXXXXRVIAADGSLRELPAS--PCVAVVSDVLGGGD 58
MGS LSC +R + + +VIAADGSL E+ A+ C VSDVLGG
Sbjct: 1 MGSGLSCNHRSSTLL---RHHQPAAAPPAQVIAADGSLTEVAAAAASCPVSVSDVLGG-- 55
Query: 59 DAASFFVCNSDALYFDDRPPALSPGEPLRPGELYFVLPRAMLGRPLSSADMGRLAVRASL 118
+A F+C+SDALYFD PAL GE LRPG++YF+LP +MLGRPLS DM LAVRAS
Sbjct: 56 NAGRLFLCSSDALYFDVDVPALDGGELLRPGQIYFLLPVSMLGRPLSGVDMAALAVRASD 115
Query: 119 ALV 121
ALV
Sbjct: 116 ALV 118
>Os09g0493000 Conserved hypothetical protein
Length = 201
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 30 RVIAADGSLRELPASPCVAVVSDVLGG---GDDAASFFVCNSDALYFDDRPPALSPGEPL 86
+V+ DGS+ + A + V D LGG A++ FVC SD L FD P A++ + L
Sbjct: 23 KVVFRDGSMAQFAAPG--STVRDALGGERASSSASTCFVCCSDELRFDAPPRAMAAHDAL 80
Query: 87 RPGELYFVLPRAMLGRPLSSADM 109
RPG+LYFVLP + L RPLS DM
Sbjct: 81 RPGQLYFVLPVSALRRPLSGQDM 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,243,867
Number of extensions: 201772
Number of successful extensions: 382
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 8
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)