Os02g0193200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0193200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284.34 | 0.792 | 7.19 | 0.179 | 1.34 | -2.03 | -2.84 | 1.68 | -0.714 | 5.08 | 20.4 | 214 | 19.5 | 8.47 |
| 292.32 | 0.796 | 7.2 | 0.0765 | 1.39 | -2.01 | -2.27 | -- | -0.758 | 5.26 | 20.41 | 213 | 19.5 | 8.44 |
| 302.76 | 0.81 | 7.18 | 0.179 | 1.35 | -2.11 | -- | 0.98 | -0.686 | 4.79 | 20.5 | 214 | 19.4 | 8.52 |
| 304.5 | 0.813 | 7.2 | 0.0324 | 1.4 | -2.13 | -- | -- | -0.74 | 4.81 | 20.4 | 213 | 19.5 | 8.44 |
| 355.12 | 0.878 | 7.2 | 0.162 | -- | -1.55 | -- | 1.68 | -0.654 | -- | 20.5 | 135 | 19.2 | 8.52 |
| 424.96 | 0.966 | 7.21 | -0.218 | 1.36 | -- | -0.476 | -- | -0.865 | 10.2 | -- | -- | -- | -- |
| 425.75 | 0.966 | 7.22 | -0.235 | 1.36 | -- | -- | -- | -0.865 | 10.4 | -- | -- | -- | -- |
| 353.13 | 0.875 | 7.21 | -0.0195 | -- | -1.62 | -- | -- | -0.71 | -- | 20.48 | 213 | 18.1 | 8.78 |
| 304.51 | 0.813 | 7.2 | -- | 1.41 | -2.12 | -- | -- | -0.74 | 4.82 | 20.4 | 213 | 19.5 | 8.44 |
| 539.26 | 1.09 | 7.25 | -0.257 | -- | -- | -- | -- | -0.869 | -- | -- | -- | -- | -- |
| 427.2 | 0.967 | 7.21 | -- | 1.37 | -- | -- | -- | -0.838 | 10.4 | -- | -- | -- | -- |
| 351.87 | 0.874 | 7.23 | -- | -- | -1.67 | -- | -- | -0.76 | -- | 20.21 | 260 | 17.6 | 8.63 |
| 541 | 1.09 | 7.25 | -- | -- | -- | -- | -- | -0.84 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 293.38 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 8 |
| 4 | 300.28 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 7 |
| 12 | 307.34 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 18 |
| 19 | 310.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 22 | 312.04 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 15 |
| 28 | 314.19 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 8 |
| 35 | 316.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 44 | 318.94 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 90 | 326.62 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 15 |
| 93 | 327.24 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 10 |
| 110 | 328.23 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 127 | 328.88 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 133 | 329.23 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 20 |
| 135 | 329.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 150 | 330.77 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 155 | 330.93 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 18 |
| 178 | 332.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 223 | 334.52 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 232 | 334.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 326 | 338.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 581 | 345.07 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 6 |
| 684 | 346.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 721 | 347.74 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 2 |
| 774 | 348.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 834 | 349.36 | radiation | 10 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 884 | 350.06 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |