Os06g0625000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0625000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.3 | 0.721 | 2.22 | 4.09 | 0.162 | -97.2 | -0.277 | 592 | -0.0031 | 20.9 | 999.5 | 121 | 3.03 | 3 |
| 254.58 | 0.749 | 2.88 | 0.221 | 0.154 | 1.61 | -0.302 | -- | -0.00404 | 20.9 | 999.5 | 121 | 3.03 | 3 |
| 235.24 | 0.714 | 2.27 | 3.86 | 0.171 | -97.2 | -- | 593 | -0.0114 | 20.3 | 999.5 | 104 | 3.3 | 2.95 |
| 235.51 | 0.715 | 2.87 | 0.229 | 0.172 | 4.86 | -- | -- | 0.00579 | 21.2 | 996.3 | 121 | 3.19 | 2.8 |
| 236.73 | 0.717 | 2.26 | 3.87 | -- | -98.6 | -- | 600 | -0.00354 | -- | 999 | 96 | 3.4 | 2.73 |
| 264.65 | 0.763 | 2.88 | 0.251 | 0.127 | -- | -0.365 | -- | -0.0195 | 21.7 | -- | -- | -- | -- |
| 265.15 | 0.763 | 2.88 | 0.265 | 0.129 | -- | -- | -- | -0.0187 | 21.5 | -- | -- | -- | -- |
| 236.89 | 0.717 | 2.87 | 0.235 | -- | 5.07 | -- | -- | -7.02e-05 | -- | 996.3 | 120 | 3.26 | 2.95 |
| 236.68 | 0.717 | 2.88 | -- | 0.166 | 5.16 | -- | -- | -0.034 | 20.7 | 996.4 | 118 | 3.38 | 2.32 |
| 266.14 | 0.762 | 2.87 | 0.266 | -- | -- | -- | -- | -0.0191 | -- | -- | -- | -- | -- |
| 267.01 | 0.764 | 2.88 | -- | 0.13 | -- | -- | -- | -0.0483 | 21.7 | -- | -- | -- | -- |
| 238.24 | 0.719 | 2.88 | -- | -- | 5.12 | -- | -- | -0.0289 | -- | 996.2 | 108 | 3.39 | 3.07 |
| 268.01 | 0.764 | 2.88 | -- | -- | -- | -- | -- | -0.0486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.66 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 2 | 236.67 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 4 | 236.83 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 5 | 236.84 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 9 | 237.91 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 13 | 238.23 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 35 | 240.24 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 36 | 240.24 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 240.75 | temperature | 25.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 44 | 240.93 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 45 | 240.95 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 71 | 243.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 2 |
| 93 | 246.50 | temperature | 25.0 | 30 | < th | dose independent | rect. | 12 | 2 |
| 97 | 246.63 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 120 | 247.63 | temperature | 25.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 124 | 248.05 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 161 | 249.65 | atmosphere | 995.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 181 | 249.65 | atmosphere | 995.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 182 | 249.65 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 220 | 250.08 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 225 | 250.20 | wind | 1.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 309 | 252.72 | wind | 1.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 384 | 254.25 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 401 | 254.63 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 407 | 254.70 | wind | 5.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 423 | 254.91 | radiation | 30.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 450 | 255.26 | wind | 1.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 456 | 255.37 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 465 | 255.44 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 2 |
| 486 | 255.63 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 491 | 255.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 6 | 8 |
| 512 | 255.81 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 513 | 255.81 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 516 | 255.83 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 517 | 255.83 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 534 | 255.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 540 | 255.98 | wind | 5.0 | 720 | < th | dose independent | rect. | 8 | 18 |
| 562 | 256.11 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 571 | 256.14 | wind | 1.0 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 580 | 256.20 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 591 | 256.24 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 597 | 256.27 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 606 | 256.30 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 621 | 256.38 | wind | 9.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 622 | 256.38 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 638 | 256.47 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 639 | 256.47 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 645 | 256.47 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 646 | 256.47 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 648 | 256.47 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 671 | 256.52 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 675 | 256.53 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 676 | 256.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 684 | 256.57 | atmosphere | 1000.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 690 | 256.58 | wind | 5.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 703 | 256.64 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 710 | 256.65 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 712 | 256.65 | atmosphere | 995.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 755 | 256.65 | atmosphere | 995.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 756 | 256.65 | atmosphere | 995.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 798 | 256.66 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 822 | 256.66 | atmosphere | 995.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 826 | 256.67 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 832 | 256.67 | atmosphere | 995.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 834 | 256.67 | wind | 1.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 858 | 256.68 | atmosphere | 995.0 | 1440 | > th | dose independent | no | NA | NA |
| 859 | 256.68 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 863 | 256.68 | atmosphere | 995.0 | 1440 | < th | dose independent | no | NA | NA |