BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0625000 Os06g0625000|Os06g0625000
(158 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66580.1 | chr5:26572724-26573194 FORWARD LENGTH=157 73 5e-14
AT1G76600.1 | chr1:28746975-28747625 FORWARD LENGTH=217 72 1e-13
AT3G50800.1 | chr3:18882444-18882902 REVERSE LENGTH=153 71 2e-13
AT1G21010.1 | chr1:7346239-7346871 FORWARD LENGTH=211 65 1e-11
AT4G37240.1 | chr4:17524546-17525052 FORWARD LENGTH=169 61 3e-10
AT2G23690.1 | chr2:10072297-10072788 FORWARD LENGTH=164 59 9e-10
>AT5G66580.1 | chr5:26572724-26573194 FORWARD LENGTH=157
Length = 156
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 32 DGSLTEVXXXXXSCPVSVSDVLGGNAGRLFLCSSDALYFDVDVPALDGGELLRPGQIYFL 91
DG+L E S PV V +L N F+C+SD + FD V A+ G E LR GQ+YF+
Sbjct: 21 DGTLQEF-----SSPVKVWQILQKNPTS-FVCNSDEMDFDDAVSAVAGNEELRSGQLYFV 74
Query: 92 LPVSMLGRPLSGVDMAALAVRASDALV 118
LP++ L PL +MAALAV+AS AL
Sbjct: 75 LPLTWLNHPLRAEEMAALAVKASSALT 101
>AT1G76600.1 | chr1:28746975-28747625 FORWARD LENGTH=217
Length = 216
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 61 FLCSSDALYFDVDVPALDGGELLRPGQIYFLLPVSMLGRPLSGVDMAALAVRASDALVAR 120
FLC+SD+LY+D +PA++ E+L+ QIYF+LP+S LS DMAALAV+AS A+
Sbjct: 58 FLCNSDSLYYDDFIPAIESDEILQANQIYFVLPISKRQYRLSASDMAALAVKASVAIEKA 117
Query: 121 A--RPRHQRGGGV 131
A + R +R G +
Sbjct: 118 AGKKNRRRRSGRI 130
>AT3G50800.1 | chr3:18882444-18882902 REVERSE LENGTH=153
Length = 152
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 32 DGSLTEVXXXXXSCPVSVSDVLGGNAGRLFLCSSDALYFDVDVPALDGGELLRPGQIYFL 91
DG+L E S PV V +L N F+C+SD + FD V A+ G E LRPG++YF+
Sbjct: 21 DGTLQEF-----STPVKVWQILQKNPTS-FVCNSDDMDFDDAVLAVPGSEDLRPGELYFV 74
Query: 92 LPVSMLGRPLSGVDMAALAVRASDAL 117
LP++ L PL +MAALAV+AS AL
Sbjct: 75 LPLTWLNHPLRADEMAALAVKASSAL 100
>AT1G21010.1 | chr1:7346239-7346871 FORWARD LENGTH=211
Length = 210
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 61 FLCSSDALYFDVDVPALDGGELLRPGQIYFLLPVSMLGRPLSGVDMAALAVRASDALVAR 120
F+C SD+LY+D +PA+ E L+ QIYF+LP+S L+ DMAALAV+AS A+
Sbjct: 60 FICDSDSLYYDDFIPAIKSEEPLQADQIYFVLPISKRQSRLTASDMAALAVKASVAIQNS 119
Query: 121 ARPRHQRGGGVK 132
+ +R V+
Sbjct: 120 VKKESRRRKKVR 131
>AT4G37240.1 | chr4:17524546-17525052 FORWARD LENGTH=169
Length = 168
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 61 FLCSSDALYFDVDVPALDGGELLRPGQIYFLLPVSMLGRPLSGVDMAALAVRASDALV 118
F+C+SD + FD V A+ E L+ GQIYF LP+ L +PL +MAALAV+AS AL+
Sbjct: 44 FICNSDDMDFDDAVAAISADEELQLGQIYFALPLCWLRQPLKAEEMAALAVKASSALM 101
>AT2G23690.1 | chr2:10072297-10072788 FORWARD LENGTH=164
Length = 163
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 32 DGSLTEVXXXXXSCPVSVSDVLGGNAGRLFLCSSDALYFDVDVPALDGGELLRPGQIYFL 91
DG + E PV V VL N F+C+SD + FD V A+ E + GQ+YF
Sbjct: 21 DGRMMEFTS-----PVKVGYVLQKNP-MCFICNSDDMDFDNVVSAISADEEFQLGQLYFA 74
Query: 92 LPVSMLGRPLSGVDMAALAVRASDALV 118
LP+S L L +MAALAV+AS AL+
Sbjct: 75 LPLSSLHHSLKAEEMAALAVKASSALM 101
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,065,604
Number of extensions: 108412
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 6
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)