BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0177500 Os02g0177500|AK062715
(86 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0177500 Similar to Small nuclear ribonucleoprotein F (... 176 2e-45
Os11g0657300 Similar to Small nuclear ribonucleoprotein F (... 175 7e-45
Os04g0388900 Similar to U6 snRNA-associated Sm-like protein... 75 1e-14
Os02g0510100 Similar to U6 snRNA-associated Sm-like protein... 74 2e-14
>Os02g0177500 Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm
protein F) (Sm-F) (SmF)
Length = 86
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 61 GEILIRCNNVLYLRGVPEDTEIEDAE 86
GEILIRCNNVLYLRGVPEDTEIEDAE
Sbjct: 61 GEILIRCNNVLYLRGVPEDTEIEDAE 86
>Os11g0657300 Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm
protein F) (Sm-F) (SmF)
Length = 86
Score = 175 bits (443), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/86 (98%), Positives = 85/86 (98%)
Query: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 61 GEILIRCNNVLYLRGVPEDTEIEDAE 86
GEILIRCNNVLYLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVLYLRGVPEDAEIEDAE 86
>Os04g0388900 Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein
F)
Length = 97
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 21 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 80
Query: 68 NNVLYLRGVPEDTEIEDA 85
NNVLY+ + T +DA
Sbjct: 81 NNVLYI-STSKRTLTDDA 97
>Os02g0510100 Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein
F)
Length = 96
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 20 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 79
Query: 68 NNVLYL 73
NNVLY+
Sbjct: 80 NNVLYI 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,870,748
Number of extensions: 96514
Number of successful extensions: 148
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)