Os02g0510100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).
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Os02g0510100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.96 | 0.215 | 12.2 | -0.433 | 0.0357 | -0.32 | 0.269 | 0.708 | -0.168 | 12 | 21.3 | 3297 | -- | -- |
| 20.35 | 0.21 | 12.1 | -0.409 | 0.0225 | -0.63 | 0.309 | -- | -0.136 | 11.3 | 18.5 | 4840 | -- | -- |
| 20.95 | 0.213 | 12.1 | -0.358 | 0.0643 | -0.302 | -- | 0.662 | -0.152 | 15.1 | 22.44 | 1979 | -- | -- |
| 20.59 | 0.211 | 12.1 | -0.379 | 0.0654 | -0.606 | -- | -- | -0.128 | 15.7 | 18.49 | 4910 | -- | -- |
| 21.1 | 0.214 | 12.2 | -0.377 | -- | -0.318 | -- | 0.663 | -0.17 | -- | 22.5 | 1738 | -- | -- |
| 25.69 | 0.238 | 12.1 | -0.0419 | 0.00172 | -- | 0.319 | -- | -0.00133 | 10.3 | -- | -- | -- | -- |
| 25.9 | 0.238 | 12.1 | -0.0268 | 0.0614 | -- | -- | -- | 0.0011 | 16.6 | -- | -- | -- | -- |
| 20.79 | 0.212 | 12.1 | -0.394 | -- | -0.632 | -- | -- | -0.135 | -- | 18.3 | 4835 | -- | -- |
| 22.83 | 0.223 | 12.1 | -- | 0.0681 | -0.433 | -- | -- | -0.0516 | 15.2 | 18.3 | 3416 | -- | -- |
| 26.1 | 0.239 | 12.1 | -0.0292 | -- | -- | -- | -- | -0.00051 | -- | -- | -- | -- | -- |
| 25.92 | 0.238 | 12.1 | -- | 0.0619 | -- | -- | -- | 0.00409 | 16.6 | -- | -- | -- | -- |
| 23.06 | 0.224 | 12.1 | -- | -- | -0.443 | -- | -- | -0.0516 | -- | 18.08 | 3380 | -- | -- |
| 26.12 | 0.239 | 12.1 | -- | -- | -- | -- | -- | 0.00273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.55 | radiation | 30 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 4 | 19.68 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 26 | 19.89 | radiation | 20 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 35 | 19.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 37 | 19.94 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 50 | 20.00 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 61 | 20.01 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 64 | 20.02 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 65 | 20.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 110 | 20.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 112 | 20.03 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 152 | 20.05 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 193 | 20.08 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 198 | 20.09 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 210 | 20.10 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 211 | 20.10 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 243 | 20.13 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 249 | 20.14 | radiation | 30 | 43200 | < th | dose independent | sin | 7 | NA |
| 250 | 20.14 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 345 | 20.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 487 | 20.21 | radiation | 30 | 43200 | > th | dose independent | sin | 7 | NA |
| 501 | 20.22 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 551 | 20.23 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 715 | 20.26 | radiation | 10 | 43200 | > th | dose dependent | sin | 7 | NA |
| 863 | 20.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 864 | 20.29 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |