Os04g0388900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).
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Os04g0388900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.48 | 0.324 | 9.83 | 0.0508 | 0.287 | 0.693 | -0.476 | 0.959 | 0.207 | 16.2 | 20.9 | 1531 | -- | -- |
| 49.39 | 0.327 | 9.86 | -0.131 | 0.277 | 0.6 | -0.337 | -- | 0.153 | 15.9 | 20.9 | 1586 | -- | -- |
| 48.06 | 0.323 | 9.83 | 0.0399 | 0.284 | 0.708 | -- | 0.979 | 0.205 | 15.8 | 20.9 | 1527 | -- | -- |
| 49.89 | 0.329 | 9.86 | -0.159 | 0.28 | 0.604 | -- | -- | 0.152 | 15.8 | 20.7 | 1588 | -- | -- |
| 52.4 | 0.337 | 9.83 | 0.0335 | -- | 0.688 | -- | 0.971 | 0.202 | -- | 21 | 1591 | -- | -- |
| 58.07 | 0.357 | 9.82 | 0.0927 | 0.281 | -- | -0.413 | -- | 0.311 | 16.1 | -- | -- | -- | -- |
| 58.52 | 0.358 | 9.82 | 0.0884 | 0.278 | -- | -- | -- | 0.309 | 15.8 | -- | -- | -- | -- |
| 54.18 | 0.343 | 9.86 | -0.178 | -- | 0.591 | -- | -- | 0.153 | -- | 20.98 | 1655 | -- | -- |
| 48.84 | 0.327 | 9.85 | -- | 0.22 | 0.408 | -- | -- | 0.193 | 18 | 22.2 | 1517 | -- | -- |
| 62.78 | 0.37 | 9.82 | 0.0769 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 58.73 | 0.358 | 9.83 | -- | 0.276 | -- | -- | -- | 0.299 | 15.8 | -- | -- | -- | -- |
| 51.34 | 0.335 | 9.85 | -- | -- | 0.413 | -- | -- | 0.187 | -- | 22.2 | 1517 | -- | -- |
| 62.93 | 0.37 | 9.83 | -- | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.87 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 2 | 43.11 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 3 | 44.11 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 5 | 44.24 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 7 | 44.25 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 14 | 44.37 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 17 | 44.40 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 18 | 44.41 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 20 | 44.41 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 26 | 44.47 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 15 |
| 29 | 44.49 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 34 | 44.53 | wind | 3 | 14400 | > th | dose independent | sin | 6 | NA |
| 48 | 44.63 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 53 | 44.64 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 64 | 44.69 | wind | 3 | 14400 | < th | dose dependent | sin | 6 | NA |
| 79 | 44.75 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 83 | 44.76 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 93 | 44.79 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 128 | 44.94 | wind | 7 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 157 | 44.98 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 167 | 45.01 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 169 | 45.02 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 171 | 45.03 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 212 | 45.11 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 230 | 45.16 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 231 | 45.16 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 245 | 45.18 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 247 | 45.18 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 249 | 45.18 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 286 | 45.24 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 301 | 45.26 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 307 | 45.27 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 393 | 45.40 | wind | 9 | 14400 | < th | dose dependent | rect. | 22 | 15 |
| 420 | 45.45 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 448 | 45.49 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 462 | 45.51 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 500 | 45.56 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 557 | 45.66 | wind | 1 | 14400 | > th | dose dependent | sin | 7 | NA |
| 566 | 45.67 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 612 | 45.72 | wind | 9 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 615 | 45.73 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 700 | 45.84 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 795 | 45.93 | wind | 1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 852 | 46.01 | wind | 9 | 14400 | < th | dose independent | sin | 5 | NA |
| 863 | 46.02 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 877 | 46.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |