BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0388900 Os04g0388900|AK063224
(97 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G43810.1 | chr2:18149725-18150879 FORWARD LENGTH=92 150 1e-37
AT3G59810.1 | chr3:22096841-22097666 FORWARD LENGTH=92 147 8e-37
AT4G30220.2 | chr4:14803100-14804259 REVERSE LENGTH=97 74 2e-14
AT2G14285.1 | chr2:6052612-6053500 REVERSE LENGTH=62 54 2e-08
>AT2G43810.1 | chr2:18149725-18150879 FORWARD LENGTH=92
Length = 91
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 75/79 (94%)
Query: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
KTP+DFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN YGDAF+
Sbjct: 13 KTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFV 72
Query: 79 RGNNVLYISTSKRTLTDDA 97
RGNNVLYIST+K TL+D A
Sbjct: 73 RGNNVLYISTTKGTLSDGA 91
>AT3G59810.1 | chr3:22096841-22097666 FORWARD LENGTH=92
Length = 91
Score = 147 bits (372), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 72/79 (91%)
Query: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
KTP+DFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKNKYGDAFI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 79 RGNNVLYISTSKRTLTDDA 97
RGNNVLYIST T+ D A
Sbjct: 73 RGNNVLYISTVNMTVADGA 91
>AT4G30220.2 | chr4:14803100-14804259 REVERSE LENGTH=97
Length = 96
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 21 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 80
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQL G+ IR
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75
Query: 81 NNVLYI 86
NNVLY+
Sbjct: 76 NNVLYV 81
>AT2G14285.1 | chr2:6052612-6053500 REVERSE LENGTH=62
Length = 61
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 41 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 86
++Y+G LA +D YMN+ + TEEY++GQL G+ IR NNVLY+
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,705,943
Number of extensions: 57352
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 4
Length of query: 97
Length of database: 11,106,569
Length adjustment: 67
Effective length of query: 30
Effective length of database: 9,269,697
Effective search space: 278090910
Effective search space used: 278090910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)