Os02g0177500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF).
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Os02g0177500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.01 | 0.225 | 12.6 | -0.175 | 0.148 | -0.672 | 0.162 | 0.0825 | -0.0273 | 21.5 | 19.5 | 3991 | -- | -- |
| 23.02 | 0.223 | 12.6 | -0.162 | 0.15 | -0.686 | 0.164 | -- | -0.0224 | 21.4 | 19.5 | 4007 | -- | -- |
| 22.48 | 0.221 | 12.6 | -0.136 | 0.169 | -0.768 | -- | -0.329 | 0.0219 | 21.3 | 18.4 | 4090 | -- | -- |
| 22.63 | 0.222 | 12.6 | -0.191 | 0.157 | -0.755 | -- | -- | -0.0152 | 21.3 | 18.49 | 4063 | -- | -- |
| 23.66 | 0.227 | 12.6 | -0.121 | -- | -0.917 | -- | -0.498 | -0.00486 | -- | 18.4 | 3829 | -- | -- |
| 30.32 | 0.258 | 12.6 | 0.23 | 0.16 | -- | 0.165 | -- | 0.14 | 22 | -- | -- | -- | -- |
| 30.42 | 0.258 | 12.6 | 0.224 | 0.158 | -- | -- | -- | 0.139 | 22.1 | -- | -- | -- | -- |
| 23.91 | 0.228 | 12.6 | -0.181 | -- | -0.807 | -- | -- | -0.0141 | -- | 18.43 | 3788 | -- | -- |
| 23.12 | 0.224 | 12.6 | -- | 0.167 | -0.688 | -- | -- | 0.0312 | 21.5 | 18.4 | 3025 | -- | -- |
| 31.94 | 0.264 | 12.6 | 0.226 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 31.74 | 0.264 | 12.6 | -- | 0.159 | -- | -- | -- | 0.115 | 22.2 | -- | -- | -- | -- |
| 24.47 | 0.23 | 12.6 | -- | -- | -0.689 | -- | -- | 0.0231 | -- | 18.43 | 3745 | -- | -- |
| 33.28 | 0.269 | 12.6 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.09 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 2 | 22.14 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 4 | 22.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 7 | 22.42 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 9 | 22.45 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 15 | 22.53 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 17 | 22.54 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 32 | 22.68 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 36 | 22.71 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 37 | 22.71 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 40 | 22.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 48 | 22.77 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 54 | 22.79 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 55 | 22.79 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 57 | 22.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 62 | 22.83 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 67 | 22.85 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 76 | 22.89 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 88 | 22.93 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 93 | 22.94 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 97 | 22.94 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 98 | 22.94 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 197 | 23.02 | radiation | 30 | 43200 | < th | dose independent | sin | 23 | NA |
| 250 | 23.05 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 383 | 23.06 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 405 | 23.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 413 | 23.08 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 418 | 23.09 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 436 | 23.10 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 442 | 23.11 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 457 | 23.13 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 460 | 23.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 488 | 23.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 490 | 23.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 493 | 23.15 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 514 | 23.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 521 | 23.17 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 525 | 23.17 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 537 | 23.17 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 542 | 23.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 543 | 23.18 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 573 | 23.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 729 | 23.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 745 | 23.22 | temperature | 20 | 4320 | < th | dose dependent | sin | 12 | NA |
| 762 | 23.23 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 917 | 23.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 943 | 23.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |