BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0177500 Os02g0177500|AK062715
(86 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30220.2 | chr4:14803100-14804259 REVERSE LENGTH=97 157 1e-39
AT2G14285.1 | chr2:6052612-6053500 REVERSE LENGTH=62 108 8e-25
AT3G59810.1 | chr3:22096841-22097666 FORWARD LENGTH=92 75 9e-15
AT2G43810.1 | chr2:18149725-18150879 FORWARD LENGTH=92 74 1e-14
>AT4G30220.2 | chr4:14803100-14804259 REVERSE LENGTH=97
Length = 96
Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/86 (84%), Positives = 80/86 (93%)
Query: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
+ T+PVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVDSYMNLQL NTEEYIDGQ +GNL
Sbjct: 9 LQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 68
Query: 61 GEILIRCNNVLYLRGVPEDTEIEDAE 86
GEILIRCNNVLY+RGVPED E+EDA+
Sbjct: 69 GEILIRCNNVLYVRGVPEDEELEDAD 94
>AT2G14285.1 | chr2:6052612-6053500 REVERSE LENGTH=62
Length = 61
Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 28 MEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDTEIEDAE 86
MEYKG+L SVDSYMNLQL NTEEYIDGQ +GNLGEILIRCNNVLY+RGVPED E+EDA+
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDAD 59
>AT3G59810.1 | chr3:22096841-22097666 FORWARD LENGTH=92
Length = 91
Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 68 NNVLYLRGV 76
NNVLY+ V
Sbjct: 75 NNVLYISTV 83
>AT2G43810.1 | chr2:18149725-18150879 FORWARD LENGTH=92
Length = 91
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
P FL ++ GKPV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74
Query: 68 NNVLYL 73
NNVLY+
Sbjct: 75 NNVLYI 80
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,966,139
Number of extensions: 70830
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 11,106,569
Length adjustment: 57
Effective length of query: 29
Effective length of database: 9,543,857
Effective search space: 276771853
Effective search space used: 276771853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)