Os11g0657300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF).
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Os11g0657300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.28 | 0.502 | 9.1 | -0.261 | 1.11 | 1.73 | 0.83 | -2.04 | -0.241 | 18.1 | 24.94 | 91 | -- | -- |
| 115.51 | 0.501 | 9.09 | -0.0642 | 1.08 | 1.62 | 0.522 | -- | -0.268 | 18 | 23.54 | 111 | -- | -- |
| 115.81 | 0.501 | 9.09 | -0.212 | 1.11 | 1.73 | -- | -1.48 | -0.219 | 18.1 | 24.97 | 91 | -- | -- |
| 116.36 | 0.502 | 9.09 | -0.0615 | 1.1 | 1.6 | -- | -- | -0.254 | 18 | 23.55 | 113 | -- | -- |
| 150.56 | 0.571 | 9.13 | -0.536 | -- | 2.53 | -- | -2.53 | -0.46 | -- | 24.1 | 230 | -- | -- |
| 154.93 | 0.584 | 9.05 | 0.238 | 1.69 | -- | 1.18 | -- | -0.0461 | 17.2 | -- | -- | -- | -- |
| 158.43 | 0.589 | 9.05 | 0.238 | 1.7 | -- | -- | -- | -0.0405 | 17.2 | -- | -- | -- | -- |
| 154.24 | 0.578 | 9.08 | -0.209 | -- | 2.37 | -- | -- | -0.319 | -- | 24.16 | 225 | -- | -- |
| 116.46 | 0.503 | 9.09 | -- | 1.11 | 1.58 | -- | -- | -0.243 | 18 | 23.57 | 111 | -- | -- |
| 310.05 | 0.823 | 9.03 | 0.178 | -- | -- | -- | -- | -0.0834 | -- | -- | -- | -- | -- |
| 159.93 | 0.592 | 9.05 | -- | 1.7 | -- | -- | -- | -0.0671 | 17.2 | -- | -- | -- | -- |
| 155.3 | 0.58 | 9.07 | -- | -- | 2.34 | -- | -- | -0.29 | -- | 24.2 | 226 | -- | -- |
| 310.89 | 0.823 | 9.03 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.81 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 4 | 109.62 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 10 | 110.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 18 | 110.50 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 26 | 110.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 63 | 112.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 92 | 112.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 140 | 113.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 148 | 113.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 211 | 114.28 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 249 | 114.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 926 | 119.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |