BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0158100 Os02g0158100|AK073124
(543 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0158100 Dynamin family protein 1123 0.0
Os06g0687800 Similar to Pincher (EH-domain containing 4) 965 0.0
Os04g0669300 Dynamin family protein 861 0.0
Os06g0728600 EPS15 homology (EH) domain containing protein 72 2e-12
Os03g0130500 EPS15 homology (EH) domain containing protein 65 1e-10
>Os02g0158100 Dynamin family protein
Length = 543
Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/543 (100%), Positives = 543/543 (100%)
Query: 1 MELARSACSKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTK 60
MELARSACSKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTK
Sbjct: 1 MELARSACSKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTK 60
Query: 61 RQGFLGFGEFVAAMQLVSLAQAGEEITQDSLKREDLSSLDPPVMEGLDELLARSKAGVKR 120
RQGFLGFGEFVAAMQLVSLAQAGEEITQDSLKREDLSSLDPPVMEGLDELLARSKAGVKR
Sbjct: 61 RQGFLGFGEFVAAMQLVSLAQAGEEITQDSLKREDLSSLDPPVMEGLDELLARSKAGVKR 120
Query: 121 VHPEENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAYRFN 180
VHPEENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAYRFN
Sbjct: 121 VHPEENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAYRFN 180
Query: 181 DFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVVMSG 240
DFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVVMSG
Sbjct: 181 DFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVVMSG 240
Query: 241 SDERTIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQ 300
SDERTIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQ
Sbjct: 241 SDERTIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQ 300
Query: 301 RTQRSYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQ 360
RTQRSYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQ
Sbjct: 301 RTQRSYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQ 360
Query: 361 VDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQDDLL 420
VDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQDDLL
Sbjct: 361 VDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQDDLL 420
Query: 421 CDLKDIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEF 480
CDLKDIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEF
Sbjct: 421 CDLKDIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEF 480
Query: 481 AKVQREYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKNFRN 540
AKVQREYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKNFRN
Sbjct: 481 AKVQREYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKNFRN 540
Query: 541 PYE 543
PYE
Sbjct: 541 PYE 543
>Os06g0687800 Similar to Pincher (EH-domain containing 4)
Length = 544
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/546 (85%), Positives = 500/546 (91%), Gaps = 5/546 (0%)
Query: 1 MELAR---SACSKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIA 57
ME+ + S SKEH K Y WFA AD DGDGR+TG DA KFFAMS L RADLKQVWAIA
Sbjct: 1 MEIGQHPASGYSKEHQKTYQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIA 60
Query: 58 DTKRQGFLGFGEFVAAMQLVSLAQAGEEITQDSLKREDLSSLDPPVMEGLDELLARSKAG 117
D+KRQG+LGF EFV AMQLVSLAQAG+EITQDSLKR+DL SL+PP M+GLD LL +SK
Sbjct: 61 DSKRQGYLGFSEFVTAMQLVSLAQAGDEITQDSLKRDDLGSLNPPTMDGLDALLVKSKHH 120
Query: 118 VKRVHPEENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAY 177
KRV P+ +G PQ Q + + WFSSKS+KK +PL AVTSVIDGLK+LY+EKLKPLEV Y
Sbjct: 121 AKRVDPDIDGFPQAQSPATSQWFSSKSSKK--IPLNAVTSVIDGLKKLYIEKLKPLEVTY 178
Query: 178 RFNDFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVV 237
+FNDF SPLLT+SDFDAKPMVMLLGQYSTGKTTFIKHLL+TSYPGAH+GPEPTTDRFVVV
Sbjct: 179 KFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVV 238
Query: 238 MSGSDERTIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSG 297
MSG DERTIPGNTIAVQADMPF+GLTTFG AFLSKFECSQMPHPLL+HITFVDTPGVLSG
Sbjct: 239 MSGPDERTIPGNTIAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSG 298
Query: 298 EKQRTQRSYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNK 357
EKQRTQRSYDFTG+TSWFAAKCDLILLLFDPHKLDISDEFKRVI SLRGHDDKIRVVLNK
Sbjct: 299 EKQRTQRSYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNK 358
Query: 358 ADQVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQD 417
ADQVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGK+LFE+EQD
Sbjct: 359 ADQVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKELFEREQD 418
Query: 418 DLLCDLKDIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLG 477
DLL DLKDIPKKACDRR+NEFVKRARAAKIHA+IIGHLKKEMPAMMGKAKAQQRLIDNL
Sbjct: 419 DLLSDLKDIPKKACDRRINEFVKRARAAKIHAHIIGHLKKEMPAMMGKAKAQQRLIDNLE 478
Query: 478 DEFAKVQREYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKN 537
+EFAKVQRE HLPAGDFP VEHF++VLGGY+IDKFEK+KPK+VQAVDDML YDIPELLKN
Sbjct: 479 NEFAKVQREQHLPAGDFPYVEHFRDVLGGYSIDKFEKIKPKMVQAVDDMLGYDIPELLKN 538
Query: 538 FRNPYE 543
FRNPYE
Sbjct: 539 FRNPYE 544
>Os04g0669300 Dynamin family protein
Length = 542
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/539 (75%), Positives = 468/539 (86%), Gaps = 14/539 (2%)
Query: 10 KEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQGFLGFGE 69
+E + Y WF++AD DGDGRVTG DA KFFAMS LSR +LKQVWAIAD+KRQG+LGF E
Sbjct: 13 REQREAYLRWFSLADDDGDGRVTGKDALKFFAMSNLSRPELKQVWAIADSKRQGYLGFSE 72
Query: 70 FVAAMQLVSLAQAGEEITQDSLKREDLSSLDPPVMEGLDELL-----ARSKAGVKRVHPE 124
F+ AMQLVSLAQAG EI+QD+L DL +L PP MEGLD+ L ++S + + HP
Sbjct: 73 FMTAMQLVSLAQAGNEISQDTLAHADLETLLPPTMEGLDKKLKNNSMSKSNSDIVVRHPS 132
Query: 125 ENGAPQVQVHSANSWFSSKSAKKMQVPLTAVTSVIDGLKRLYVEKLKPLEVAYRFNDFAS 184
E A SAN WF+SKS KK +PL +VTS+IDGLK+ Y+EKL+PLE Y+F+DF S
Sbjct: 133 ELPA------SAN-WFNSKSGKK--IPLRSVTSIIDGLKKSYIEKLRPLEKTYQFDDFVS 183
Query: 185 PLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLQTSYPGAHVGPEPTTDRFVVVMSGSDER 244
PLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLL+T+YPGAH+GPEPTTDRFVV+ SG DER
Sbjct: 184 PLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTNYPGAHIGPEPTTDRFVVITSGPDER 243
Query: 245 TIPGNTIAVQADMPFTGLTTFGGAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQRTQR 304
IPGNTIAVQADMP++GL++FG AFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQRTQR
Sbjct: 244 CIPGNTIAVQADMPYSGLSSFGTAFLSKFECSQMPHPLLDHITFVDTPGVLSGEKQRTQR 303
Query: 305 SYDFTGITSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQVDTQ 364
SYDFTG+TSWFAAKCDLILLLFDPHKLDISDEFKRVI SL+GHDDKIR+VLNKADQVD Q
Sbjct: 304 SYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVIGSLKGHDDKIRIVLNKADQVDAQ 363
Query: 365 QLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKDLFEKEQDDLLCDLK 424
QLMRVYGAL+WSLGKVLNTPEV RVYIGSFNDKP+ E+ GP+GK+LFEKEQ+DLL DL
Sbjct: 364 QLMRVYGALLWSLGKVLNTPEVMRVYIGSFNDKPIRETVAGPLGKELFEKEQEDLLSDLN 423
Query: 425 DIPKKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEFAKVQ 484
DIPKKACDRR+NEFVKR+R+AK+HA+II HLKKEMPA+MGKAKAQQRL+D L ++FAKVQ
Sbjct: 424 DIPKKACDRRINEFVKRSRSAKVHAHIISHLKKEMPALMGKAKAQQRLLDTLDEQFAKVQ 483
Query: 485 REYHLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKNFRNPYE 543
+E HLPAGDFP V+ ++E L YN DKFE++KPKLVQ VDDMLAYDIP+LLK+FRNPYE
Sbjct: 484 KELHLPAGDFPSVDEYRETLSAYNFDKFERLKPKLVQGVDDMLAYDIPDLLKSFRNPYE 542
>Os06g0728600 EPS15 homology (EH) domain containing protein
Length = 1188
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 16 YAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQGFLGFGEFVAAMQ 75
+ +F AD D DGR++G +A FF S L + L Q+W AD R GFLG +F A++
Sbjct: 5 FDAYFRAADLDRDGRISGQEAVAFFKASALPQPVLAQIWTYADKNRTGFLGREDFYNALR 64
Query: 76 LVSLAQAGEEITQDSLK 92
LV++AQ+G E+T D ++
Sbjct: 65 LVTVAQSGRELTPDIVR 81
>Os03g0130500 EPS15 homology (EH) domain containing protein
Length = 1068
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 14 KIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQGFLGFGEFVAA 73
+ + +F AD + DGR++G +A FF + L + L QVW AD + GFLG EF A
Sbjct: 5 EAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFLGRPEFFNA 64
Query: 74 MQLVSLAQAGEEITQDSLKREDLSSLDPPVMEGLDELLARSKAGVKRVHPE--ENGAPQV 131
++LV++AQ+G ++T D ++ S+L P + A AG + P+ GAP+
Sbjct: 65 LRLVTVAQSGRQLTPDIVQ----SALYGPAAA---RIPAPKIAGGGQAPPQMAAAGAPRP 117
Query: 132 QVHSA 136
QV++A
Sbjct: 118 QVNAA 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,542,269
Number of extensions: 789942
Number of successful extensions: 2227
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2224
Number of HSP's successfully gapped: 5
Length of query: 543
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 437
Effective length of database: 11,501,117
Effective search space: 5025988129
Effective search space used: 5025988129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)