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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0669300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dynamin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.03) R2 : 0.508
β1 : 0.823 (0.109) R2dD : 0.0661 R2D : 0.0135
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.49 (0.139) R2dE : 0.522 R2E : -0.0964
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.3 (0.614) R2dD*E : 0.529 R2D*E : -0.0319
γ1 : -0.0111 (0.0649) R2dN8 : 4.64e-05 R2N8 : -0.0107
σ : 0.547
deviance : 137.96
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.684
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.5
open length of G : 4.16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.44 0.547 3.37 0.799 0.115 -2.46 0.768 -11.2 -0.014 15.1 6.609 4322 18.5 4.05
214.35 0.682 3.37 0.559 0.15 -1.26 0.69 -- -0.0104 14.4 8.4 4320 18.5 3.95
136.76 0.545 3.37 0.827 0.14 -2.49 -- -11.3 -0.0117 13.1 6.686 4321 18.5 4.17
194.49 0.65 3.37 0.54 0.139 -1.29 -- -- -0.0182 12.5 8.5 4320 18.3 3.26
137.96 0.547 3.37 0.823 -- -2.49 -- -11.3 -0.0111 -- 6.684 4321 18.5 4.16
266.78 0.766 3.31 0.518 0.193 -- 0.561 -- -0.128 12.9 -- -- -- --
267.95 0.767 3.31 0.538 0.197 -- -- -- -0.126 11.9 -- -- -- --
188.92 0.64 3.37 0.674 -- -1.64 -- -- -0.015 -- 8.458 4319 18.3 3.23
189.96 0.642 3.36 -- 0.124 -1.74 -- -- -0.0189 12 8.502 4319 18.3 3.24
270.38 0.768 3.31 0.532 -- -- -- -- -0.129 -- -- -- -- --
275.57 0.777 3.32 -- 0.19 -- -- -- -0.186 11.7 -- -- -- --
188.41 0.639 3.36 -- -- -1.95 -- -- -0.0136 -- 8.7 4319 18.4 3.23
277.84 0.778 3.33 -- -- -- -- -- -0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.16 wind 5 4320 > th dose dependent rect. 20 3
3 143.47 wind 7 4320 < th dose independent rect. 18 4
13 145.10 wind 7 4320 > th dose independent rect. 18 4
154 157.68 humidity 90 1440 < th dose dependent rect. 3 1
155 158.41 atmosphere 995 14400 < th dose dependent rect. 16 1
157 158.42 atmosphere 995 14400 < th dose independent rect. 16 2
180 159.02 atmosphere 995 14400 > th dose independent rect. 16 2
201 160.68 atmosphere 995 14400 > th dose independent rect. 13 6
234 160.90 atmosphere 995 14400 > th dose independent rect. 8 11
239 160.97 atmosphere 995 14400 > th dose independent rect. 10 9
380 163.81 atmosphere 995 14400 < th dose independent rect. 3 13
389 163.87 atmosphere 995 14400 > th dose independent rect. 24 16
398 164.13 atmosphere 995 14400 > th dose independent rect. 19 21
443 165.00 atmosphere 995 14400 > th dose independent sin 4 NA
489 165.33 humidity 90 1440 < th dose dependent rect. 23 8
495 165.47 atmosphere 995 14400 < th dose dependent sin 0 NA
503 165.52 atmosphere 995 14400 < th dose independent sin 3 NA
511 165.61 atmosphere 995 14400 > th dose independent sin 23 NA
524 165.86 atmosphere 995 14400 < th dose independent sin 22 NA
580 166.18 humidity 90 1440 < th dose dependent rect. 2 5
658 166.76 atmosphere 995 14400 > th dose independent rect. 24 21
718 166.85 atmosphere 995 14400 > th dose independent no NA NA
725 166.85 atmosphere 995 14400 > th dose independent rect. 10 23
726 166.85 atmosphere 995 14400 > th dose independent rect. 14 23
729 166.86 atmosphere 995 14400 > th dose independent rect. 12 23
812 167.22 atmosphere 995 14400 > th dose independent rect. 14 19
908 167.38 atmosphere 995 14400 < th dose independent no NA NA