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Os06g0687800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pincher (EH-domain containing 4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0158) R2 : 0.859
β1 : -1.83 (0.058) R2dD : 0.318 R2D : 0.247
β2 : 1.74 (0.0412) R2dC : 0.552 R2C : 0.512
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.481 (0.0338) R2dN8 : 0.0837 R2N8 : -0.00091
σ : 0.298
deviance : 40.41
__
_____
C
peak time of C : 6.74
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.46 0.28 10.9 -1.92 1.76 -0.359 -0.94 1.27 -0.541 6.68 73 1570 -- --
37.19 0.284 10.9 -1.8 1.73 -0.286 -0.908 -- -0.514 6.77 72.63 1414 -- --
37.65 0.286 10.9 -1.93 1.75 -0.363 -- 1.25 -0.539 6.68 73.92 1538 -- --
39.29 0.292 10.9 -1.82 1.73 -0.291 -- -- -0.514 6.75 72.9 1423 -- --
108.09 0.484 10.9 -1.85 -- 1.65 -- -0.518 -0.371 -- 66.5 490 -- --
38.32 0.29 10.9 -1.81 1.74 -- -0.907 -- -0.483 6.76 -- -- -- --
40.41 0.298 10.9 -1.83 1.74 -- -- -- -0.481 6.74 -- -- -- --
107.37 0.483 10.9 -1.83 -- 1.62 -- -- -0.342 -- 66 488 -- --
123.45 0.517 10.9 -- 1.76 -0.624 -- -- -0.544 6.89 82.02 6631 -- --
197.95 0.657 10.9 -1.79 -- -- -- -- -0.447 -- -- -- -- --
128.39 0.53 10.8 -- 1.71 -- -- -- -0.277 6.81 -- -- -- --
194.47 0.65 10.8 -- -- 1.66 -- -- -0.167 -- 62.42 503 -- --
282.24 0.784 10.9 -- -- -- -- -- -0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.14 radiation 1.0 30 < th dose independent rect. 23 18
5 32.42 radiation 1.0 30 < th dose dependent rect. 23 19
11 32.58 temperature 10.0 270 > th dose dependent rect. 16 6
12 32.60 temperature 15.0 270 > th dose independent rect. 16 5
15 32.63 wind 9.0 270 < th dose independent rect. 21 19
17 32.69 wind 7.0 270 < th dose independent rect. 16 5
18 32.72 radiation 30.0 270 < th dose independent rect. 16 5
21 32.75 temperature 10.0 270 > th dose independent rect. 21 19
24 32.78 atmosphere 1010.0 270 < th dose independent rect. 16 5
28 32.84 temperature 30.0 270 < th dose independent rect. 2 9
31 32.86 wind 9.0 90 < th dose independent rect. 23 18
35 32.89 wind 1.0 270 > th dose independent rect. 16 5
43 32.95 precipitation 0.1 270 < th dose independent rect. 16 5
44 32.95 precipitation 0.1 270 < th dose dependent rect. 16 5
45 32.96 precipitation 0.1 270 < th dose independent rect. 2 9
46 32.96 precipitation 0.1 270 < th dose dependent rect. 2 9
49 32.97 radiation 30.0 270 < th dose independent rect. 15 7
54 32.98 temperature 10.0 90 > th dose independent rect. 23 18
55 32.98 radiation 40.0 90 < th dose dependent rect. 17 6
60 33.00 wind 9.0 270 < th dose dependent rect. 16 5
63 33.01 atmosphere 995.0 90 > th dose independent rect. 17 6
68 33.02 radiation 40.0 270 < th dose dependent rect. 16 18
86 33.10 atmosphere 995.0 270 > th dose independent rect. 21 19
87 33.10 temperature 10.0 90 > th dose dependent rect. 23 18
88 33.11 radiation 1.0 30 < th dose independent rect. 23 15
99 33.14 radiation 1.0 30 < th dose independent rect. 23 13
103 33.15 precipitation 0.1 270 < th dose independent rect. 21 19
104 33.15 precipitation 0.1 270 < th dose dependent rect. 21 19
108 33.17 radiation 1.0 30 < th dose independent rect. 23 9
114 33.18 wind 7.0 270 < th dose independent rect. 17 3
117 33.19 atmosphere 1015.0 90 < th dose independent rect. 23 18
118 33.20 wind 9.0 270 < th dose dependent rect. 17 3
121 33.22 wind 1.0 270 > th dose independent rect. 22 18
127 33.24 temperature 15.0 270 > th dose independent rect. 2 9
133 33.27 humidity 50.0 90 > th dose independent rect. 17 6
134 33.27 atmosphere 995.0 270 > th dose independent rect. 22 17
144 33.29 atmosphere 1015.0 270 < th dose independent rect. 21 19
146 33.30 wind 9.0 270 < th dose independent rect. 11 15
148 33.31 radiation 10.0 270 < th dose independent rect. 17 3
150 33.31 precipitation 0.1 90 < th dose independent rect. 23 18
152 33.31 precipitation 0.1 90 < th dose dependent rect. 23 18
153 33.31 temperature 10.0 270 > th dose dependent rect. 21 19
156 33.33 atmosphere 995.0 270 > th dose independent rect. 2 9
157 33.33 atmosphere 1015.0 270 < th dose independent rect. 2 9
158 33.33 temperature 10.0 270 > th dose independent rect. 11 15
159 33.33 precipitation 0.1 270 < th dose independent rect. 11 15
161 33.33 precipitation 0.1 270 < th dose dependent rect. 11 15
170 33.35 wind 9.0 270 < th dose independent rect. 2 9
190 33.40 humidity 50.0 270 > th dose independent rect. 2 9
195 33.41 humidity 50.0 14400 > th dose independent rect. 19 5
199 33.42 radiation 20.0 270 < th dose independent rect. 16 17
208 33.44 radiation 40.0 270 < th dose dependent rect. 17 3
209 33.44 radiation 1.0 30 < th dose dependent rect. 23 15
222 33.47 precipitation 0.1 270 < th dose independent rect. 17 3
229 33.47 precipitation 0.1 270 < th dose dependent rect. 17 3
231 33.47 radiation 1.0 30 < th dose dependent rect. 23 13
236 33.49 radiation 1.0 30 < th dose independent rect. 23 7
248 33.50 radiation 1.0 30 < th dose dependent rect. 23 9
259 33.52 atmosphere 995.0 270 > th dose independent rect. 17 3
291 33.58 humidity 50.0 270 > th dose independent rect. 17 3
335 33.67 radiation 1.0 30 < th dose dependent rect. 23 7
341 33.68 wind 5.0 10 < th dose independent rect. 18 5
377 33.74 wind 9.0 270 < th dose dependent rect. 18 1
397 33.78 wind 7.0 270 < th dose independent rect. 18 1
446 33.83 radiation 10.0 10 < th dose dependent rect. 18 5
454 33.84 humidity 50.0 270 > th dose independent rect. 21 19
459 33.85 radiation 10.0 10 < th dose independent rect. 18 5
469 33.86 radiation 10.0 43200 < th dose dependent rect. 19 5
491 33.88 wind 9.0 10 < th dose dependent rect. 18 5
511 33.90 temperature 10.0 10 > th dose independent rect. 18 5
513 33.90 humidity 50.0 10 > th dose independent rect. 18 5
515 33.90 atmosphere 995.0 10 > th dose independent rect. 18 5
516 33.90 atmosphere 1010.0 10 < th dose independent rect. 18 5
527 33.90 temperature 10.0 10 > th dose independent rect. 23 19
573 33.93 radiation 1.0 30 > th dose independent rect. 18 19
587 33.95 temperature 15.0 270 > th dose independent rect. 16 18
597 33.96 wind 7.0 270 < th dose independent rect. 16 17
609 33.98 precipitation 0.1 10 < th dose independent rect. 18 5
610 33.98 radiation 1.0 30 > th dose independent rect. 5 8
625 33.98 precipitation 0.1 10 < th dose dependent rect. 18 5
651 34.00 atmosphere 1015.0 10 < th dose independent rect. 23 19
660 34.01 radiation 10.0 270 < th dose dependent rect. 18 1
677 34.03 humidity 50.0 270 > th dose independent rect. 18 1
714 34.06 atmosphere 995.0 270 > th dose independent rect. 11 15
723 34.07 wind 9.0 270 < th dose independent rect. 9 7
735 34.08 atmosphere 1015.0 270 < th dose dependent rect. 17 3
737 34.08 atmosphere 1015.0 270 < th dose dependent rect. 16 5
741 34.08 humidity 70.0 10 > th dose dependent rect. 23 18
760 34.10 humidity 60.0 10 > th dose dependent rect. 23 10
818 34.14 humidity 50.0 10 > th dose independent rect. 23 19
860 34.17 humidity 50.0 10 > th dose dependent rect. 18 5
861 34.17 temperature 20.0 270 > th dose dependent rect. 7 8
868 34.18 atmosphere 995.0 270 > th dose independent rect. 18 1
876 34.18 precipitation 0.1 270 < th dose independent rect. 16 17
878 34.18 humidity 50.0 270 > th dose dependent rect. 21 6
881 34.18 precipitation 0.1 270 < th dose dependent rect. 16 17
884 34.19 radiation 1.0 30 > th dose independent sin 5 NA
904 34.20 temperature 20.0 30 > th dose independent rect. 5 18
914 34.21 wind 1.0 270 > th dose independent rect. 10 6
916 34.21 temperature 10.0 270 > th dose independent rect. 9 7
917 34.21 atmosphere 1015.0 270 < th dose independent rect. 9 7
923 34.21 atmosphere 1015.0 270 < th dose dependent rect. 11 4
953 34.23 wind 1.0 270 > th dose independent rect. 7 9
981 34.25 precipitation 0.1 270 < th dose independent rect. 10 6
983 34.25 temperature 25.0 270 > th dose independent rect. 7 8
990 34.25 atmosphere 1015.0 270 < th dose dependent rect. 10 6
991 34.25 precipitation 0.1 270 < th dose dependent rect. 10 6
995 34.25 temperature 10.0 270 > th dose dependent rect. 7 9