BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0687800 Os06g0687800|AK072593
(544 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20290.1 | chr3:7075057-7078655 REVERSE LENGTH=546 887 0.0
AT4G05520.1 | chr4:2804522-2807833 FORWARD LENGTH=547 845 0.0
AT1G21630.2 | chr1:7581457-7587796 FORWARD LENGTH=1248 80 4e-15
AT1G20760.1 | chr1:7209515-7214773 FORWARD LENGTH=1020 64 2e-10
>AT3G20290.1 | chr3:7075057-7078655 REVERSE LENGTH=546
Length = 545
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/545 (79%), Positives = 483/545 (88%), Gaps = 1/545 (0%)
Query: 1 MEIGQHPASGYSKEHQKTYQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIA 60
MEI A SKE+Q Y+EWF F+DSDGDGRITG DAIKFF MS LPR +LKQ+WAIA
Sbjct: 1 MEIESVAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIA 60
Query: 61 DSKRQGYLGFSEFVTAMQLVSLAQAGDEITQDSLKRD-DLGSLNPPTMDGLDALLVKSKH 119
DSKRQGYLGF EF+ AMQLVSLAQ G EI+ + L D D ++NPPTM+GL L+ K KH
Sbjct: 61 DSKRQGYLGFKEFIVAMQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGLGVLMAKKKH 120
Query: 120 HAKRVDPDIDGFPQAQSPATSQWFSSKSSKKIPLNAVTSVIDGLKKLYIEKLKPLEVTYK 179
+K DP+++G P A + T+ WFSSKSSKKI L++VTS++DGLK+LYI+KLKPLEV Y+
Sbjct: 121 SSKSSDPNMNGSPAADTSLTAHWFSSKSSKKISLSSVTSIVDGLKRLYIQKLKPLEVAYR 180
Query: 180 FNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVM 239
FNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLL+++YPGAHIGPEPTTDRFVVVM
Sbjct: 181 FNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSTYPGAHIGPEPTTDRFVVVM 240
Query: 240 SGPDERTIPGNTIAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGE 299
SGPDER+IPGNT+AVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEH+TFVDTPGVLSGE
Sbjct: 241 SGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHVTFVDTPGVLSGE 300
Query: 300 KQRTQRSYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKA 359
KQRTQR+YDFTGVTSWFA+KCDLILLLFDPHKLD+SDEFKRVI SLRGHDDKIRVVLNKA
Sbjct: 301 KQRTQRAYDFTGVTSWFASKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKA 360
Query: 360 DQVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKELFEREQDD 419
DQVDTQQLMRVYGALMWSLGKVLNTPEV+RVYIGSF+DKP+NE+A GPIG+ELFE+EQDD
Sbjct: 361 DQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFSDKPINEAATGPIGRELFEKEQDD 420
Query: 420 LLSDLKDIPKKACDRRINEFVXXXXXXXXXXXXXGHLKKEMPAMMGKAKAQQRLIDNLEN 479
LL+DLKDIPKKACDRRINEFV HLKKEMPA+MGKAKAQQ+LIDNLE+
Sbjct: 421 LLADLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAIMGKAKAQQKLIDNLED 480
Query: 480 EFAKVQREQHLPAGDFPYVEHFRDVLGGYSIDKFEKIKPKMVQAVDDMLGYDIPELLKNF 539
EF KVQRE HLP GDFP V+HFR+VL GY+IDKFEK+KPKM+Q VDDMLGYDIPELLKNF
Sbjct: 481 EFGKVQREHHLPKGDFPNVDHFREVLSGYNIDKFEKLKPKMLQTVDDMLGYDIPELLKNF 540
Query: 540 RNPYE 544
+NPY+
Sbjct: 541 KNPYD 545
>AT4G05520.1 | chr4:2804522-2807833 FORWARD LENGTH=547
Length = 546
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/533 (76%), Positives = 455/533 (85%), Gaps = 2/533 (0%)
Query: 13 KEHQKTYQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIADSKRQGYLGFSE 72
KEHQK Y+EWF ADSDGDGR++G DA KFFAMSKL R +LKQVWA+ADSKRQG+LG SE
Sbjct: 14 KEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSE 73
Query: 73 FVTAMQLVSLAQAGDEITQDSLKRD-DLGSLNPPTMDGLDALLVKSKHHAKRVDPDIDGF 131
F+TAM+LVSLAQ G EIT D LK D+ S+ P ++GL+ ++ K K VD + +
Sbjct: 74 FITAMKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGLENVVSKQKVSKTNVDVEDNVV 133
Query: 132 PQAQSPATSQWFSSKSSKKIPLNAVTSVIDGLKKLYIEKLKPLEVTYKFNDFVSPLLTNS 191
+ Q A + WF SKS K +N VT ++DGLK+LY EKLKPLEVTY+FNDF SP+LT+S
Sbjct: 134 TKPQVTAKTPWFKSKSIIKPQVNVVT-IVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSS 192
Query: 192 DFDAKPMVMLLGQYSTGKTTFIKHLLRTSYPGAHIGPEPTTDRFVVVMSGPDERTIPGNT 251
DFDAKPMVMLLGQYSTGKTTFIKHLL YPGAHIGPEPTTDRFVV MSGPDERTIPGNT
Sbjct: 193 DFDAKPMVMLLGQYSTGKTTFIKHLLGCDYPGAHIGPEPTTDRFVVAMSGPDERTIPGNT 252
Query: 252 IAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRSYDFTG 311
+AVQADMPF+GLT+FG AFLSKFECSQMPHP+L+ IT VDTPGVLSGEKQR QRSYDFTG
Sbjct: 253 MAVQADMPFNGLTSFGGAFLSKFECSQMPHPVLDQITLVDTPGVLSGEKQRMQRSYDFTG 312
Query: 312 VTSWFAAKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKADQVDTQQLMRVY 371
V SWFA+KCD+ILLLFDPHKLDISDEFKRVI SLRG++DKIRVVLNKADQVDTQQLMRVY
Sbjct: 313 VISWFASKCDMILLLFDPHKLDISDEFKRVITSLRGNEDKIRVVLNKADQVDTQQLMRVY 372
Query: 372 GALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIGKELFEREQDDLLSDLKDIPKKA 431
GALMWSLGKVLNTPEV RVYIGSFNDKP+NE AVGPIGKELFE+EQ+DLL+DL D+PKKA
Sbjct: 373 GALMWSLGKVLNTPEVVRVYIGSFNDKPINEVAVGPIGKELFEKEQNDLLADLMDVPKKA 432
Query: 432 CDRRINEFVXXXXXXXXXXXXXGHLKKEMPAMMGKAKAQQRLIDNLENEFAKVQREQHLP 491
CDR+INEFV HLKKEMPAMMGK+KAQQRL+DNLE EF KVQRE HLP
Sbjct: 433 CDRKINEFVKRARSAKINAYIMSHLKKEMPAMMGKSKAQQRLMDNLEEEFGKVQREFHLP 492
Query: 492 AGDFPYVEHFRDVLGGYSIDKFEKIKPKMVQAVDDMLGYDIPELLKNFRNPYE 544
AGDFP VEHFR+VLGGY+IDKFEK+KPKM+QAVDDMLGYDIP+LLK FRNPY+
Sbjct: 493 AGDFPSVEHFREVLGGYNIDKFEKLKPKMIQAVDDMLGYDIPDLLKKFRNPYD 545
>AT1G21630.2 | chr1:7581457-7587796 FORWARD LENGTH=1248
Length = 1247
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 16 QKTYQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIADSKRQGYLGFSEFVT 75
Q + +F AD DGDG I+G +A+ FF S LP+ L QVW+ ADSK+ GYLG +EF
Sbjct: 10 QDLFDTYFRRADLDGDGHISGAEAVAFFQGSNLPKHVLAQVWSYADSKKAGYLGRAEFYN 69
Query: 76 AMQLVSLAQAGDEITQDSLK 95
A++LV++AQ+ E+T + +K
Sbjct: 70 ALKLVTVAQSRRELTAEIVK 89
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 19 YQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIADSKRQGYLGFSEFVTAMQ 78
Y + F D+D DG+ITG A F +LPR LKQVW ++D L EF A+
Sbjct: 428 YTKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVY 487
Query: 79 LVSLAQAG 86
L+ + G
Sbjct: 488 LMERYREG 495
>AT1G20760.1 | chr1:7209515-7214773 FORWARD LENGTH=1020
Length = 1019
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 19 YQEWFAFADSDGDGRITGPDAIKFFAMSKLPRADLKQVWAIADSKRQGYLGFSEFVTAMQ 78
++ +F AD DGDGRI+G +A+ FF S L + L Q+W+++D G+L F +++
Sbjct: 11 FEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFYNSLR 70
Query: 79 LVSLAQA----GDEITQDSLKRDDLGSLNPPTMDGLDALLVKSKHHAKRVDPDIDGFPQA 134
LV++AQ+ EI +L + PP ++ L A+ + A + GF
Sbjct: 71 LVTVAQSKRDLTPEIVNAALNTPAAAKIPPPKIN-LSAIPAPRPNPAATTVGPVSGFGGP 129
Query: 135 QSP---ATSQWFSSKSSKKIPLNAVTSVIDGLKKLYIEKLKPLEVTYKF 180
+P +F + ++++ N S + L+ + +P ++ +F
Sbjct: 130 GAPNAIVNQNYFPPQQNQQMRPNQGISGLTSLRPAAGPEYRPSALSGQF 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,042,494
Number of extensions: 515123
Number of successful extensions: 1308
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 5
Length of query: 544
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 441
Effective length of database: 8,282,721
Effective search space: 3652679961
Effective search space used: 3652679961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)