BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0156300 Os02g0156300|AK058558
(113 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0156300 Similar to Serine/threonine-protein kinase BRI... 235 7e-63
Os02g0155300 Conserved hypothetical protein 103 2e-23
Os02g0155000 Conserved hypothetical protein 75 1e-14
Os02g0153300 Conserved hypothetical protein 73 5e-14
Os02g0515100 Conserved hypothetical protein 69 7e-13
Os02g0157300 Conserved hypothetical protein 67 3e-12
Os02g0156500 Conserved hypothetical protein 65 1e-11
>Os02g0156300 Similar to Serine/threonine-protein kinase BRI1-like 2 precursor
(EC 2.7.1.37) (BRASSINOSTEROID INSENSITIVE 1-like
protein 2) (Protein VASCULAR HIGHWAY 1)
Length = 113
Score = 235 bits (599), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MLPEDISSAGRPPDRELYDRLRRDKLVMPSHTQQFVPFCHDMAMPPSCDSSARNWRRELF 60
MLPEDISSAGRPPDRELYDRLRRDKLVMPSHTQQFVPFCHDMAMPPSCDSSARNWRRELF
Sbjct: 1 MLPEDISSAGRPPDRELYDRLRRDKLVMPSHTQQFVPFCHDMAMPPSCDSSARNWRRELF 60
Query: 61 SCSTQAMAEVATMRSSSNNAAVARPEYGIASLLLHGECGVICMNSLIPASVWS 113
SCSTQAMAEVATMRSSSNNAAVARPEYGIASLLLHGECGVICMNSLIPASVWS
Sbjct: 61 SCSTQAMAEVATMRSSSNNAAVARPEYGIASLLLHGECGVICMNSLIPASVWS 113
>Os02g0155300 Conserved hypothetical protein
Length = 108
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 59/82 (71%)
Query: 28 MPSHTQQFVPFCHDMAMPPSCDSSARNWRRELFSCSTQAMAEVATMRSSSNNAAVARPEY 87
MPSH QQ +PF HDMAMP SCDS ARN RRELFSCS AM E+A SS+N AA ARPE
Sbjct: 1 MPSHAQQSMPFRHDMAMPLSCDSPARNRRRELFSCSRHAMVELAMESSSNNKAAAARPEK 60
Query: 88 GIASLLLHGECGVICMNSLIPA 109
GI SLLLH ECG M S I A
Sbjct: 61 GIPSLLLHRECGASFMISPITA 82
>Os02g0155000 Conserved hypothetical protein
Length = 138
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 56/125 (44%), Gaps = 29/125 (23%)
Query: 5 DISSAGRPPDRELYDRLRRDKLV-----------------------------MPSHTQQF 35
+ISS G + +LYDRL RDKLV +PS QQ
Sbjct: 4 NISSDGSSLESKLYDRLSRDKLVSSLRDDEMHPCRPLEASNSSVTAPSSPQMIPSQVQQS 63
Query: 36 VPFCHDMAMPPSCDSSARNWRRELFSCSTQAMAEVATMRSSSNNAAVARPEYGIASLLLH 95
V FCHD A PPSCDS RNWRRE S S + SS+ + + LLLH
Sbjct: 64 VLFCHDAARPPSCDSLVRNWRRERLSLSVHEPTGEMKVNSSNTRTGPKKFMQNLLVLLLH 123
Query: 96 GECGV 100
+CG+
Sbjct: 124 EKCGI 128
>Os02g0153300 Conserved hypothetical protein
Length = 218
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 61/139 (43%), Gaps = 34/139 (24%)
Query: 1 MLPEDISSAGRPPDRELYDRLRRDK-----------------------------LVMPSH 31
ML + I+S+G+PPD EL+DRLRR + V PSH
Sbjct: 66 MLLDAINSSGKPPDSELWDRLRRSRPVRLPRDGEIRPSRPLEASETSVTVPSALQVTPSH 125
Query: 32 TQQFVPFCHDMAMPPSCDSSARNWRRELFSCSTQAMAEVATMRSSSNNAAVARPEYGIAS 91
QQ F HD A PPS + RNWRREL SCS + A +SS+ A +
Sbjct: 126 LQQSAAFRHDTARPPSLERPERNWRRELLSCSVHELVGEARESNSSSAKARLNLRKSMKH 185
Query: 92 LLLH-----GECGVICMNS 105
LLLH C CM S
Sbjct: 186 LLLHFLHEEWSCCCFCMAS 204
>Os02g0515100 Conserved hypothetical protein
Length = 184
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 47/94 (50%), Gaps = 31/94 (32%)
Query: 1 MLPEDISSAGRPPDRELYDRLRRDKLV-----------------------------MPSH 31
MLPE+ISS G PP+ ELYDRL RDKLV +PS
Sbjct: 72 MLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVTAPSTSQMIPSQ 131
Query: 32 TQQFVPFCHDMAMPPSC--DSSARNWRRELFSCS 63
QQ V F HD A P SC DSSARN RR SCS
Sbjct: 132 VQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCS 165
>Os02g0157300 Conserved hypothetical protein
Length = 158
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 27 VMPSHTQQFVPFCHDMAMPPSCDSSARNWRRELFSCSTQAMAEVATMRSSSNNAAVARPE 86
VMPSH QQFVPF HD PPS + ARNWRR LFS S Q E A + S A P
Sbjct: 57 VMPSHVQQFVPFRHDAERPPSPERPARNWRRTLFSWSMQESVEEAKHSTVSR----ANPS 112
Query: 87 YGIASL---LLHGECGVICMNSLIPASVWS 113
+ +L LLHG+ + + + AS WS
Sbjct: 113 KSVGNLLLILLHGKWKGLMLLADRVASQWS 142
>Os02g0156500 Conserved hypothetical protein
Length = 98
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 44/98 (44%), Gaps = 30/98 (30%)
Query: 1 MLPEDISSAGRPPDRELYDRLRRDK------------------------------LVMPS 30
ML +D SS+G+PPD EL D+ K VMPS
Sbjct: 1 MLLDDTSSSGKPPDNELRDKFSLSKPVRSPRDGEMLPSRPLDAREITSTTAPFPLQVMPS 60
Query: 31 HTQQFVPFCHDMAMPPSCDSSARNWRRELFSCSTQAMA 68
QQ VPFCHD PPS DS RNWRR+ SCS A
Sbjct: 61 QVQQSVPFCHDTPRPPSFDSPERNWRRDSLSCSVHEPA 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.130 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,238,408
Number of extensions: 139306
Number of successful extensions: 483
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 7
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)