Os02g0515100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0515100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.27 | 0.336 | 9.62 | -0.752 | 1.75 | -0.697 | 0.749 | 0.244 | 0.0381 | 4.8 | 20.5 | 1006 | -- | -- |
| 51.43 | 0.334 | 9.62 | -0.792 | 1.75 | -0.733 | 0.771 | -- | 0.0374 | 4.79 | 20.55 | 1008 | -- | -- |
| 52.71 | 0.338 | 9.62 | -0.737 | 1.76 | -0.704 | -- | 0.31 | 0.041 | 4.82 | 20.5 | 1013 | -- | -- |
| 52.97 | 0.339 | 9.63 | -0.79 | 1.76 | -0.747 | -- | -- | 0.0347 | 4.82 | 20.6 | 1020 | -- | -- |
| 202.72 | 0.663 | 9.64 | -0.616 | -- | -0.725 | -- | 0.45 | 0.0552 | -- | 20.7 | 405 | -- | -- |
| 65.44 | 0.379 | 9.66 | -1.09 | 1.73 | -- | 0.91 | -- | -0.136 | 4.98 | -- | -- | -- | -- |
| 67.55 | 0.385 | 9.66 | -1.09 | 1.74 | -- | -- | -- | -0.14 | 5.02 | -- | -- | -- | -- |
| 106.59 | 0.481 | 9.63 | -0.558 | -- | -1.34 | -- | -- | 0.24 | -- | 26.3 | 299 | -- | -- |
| 60.67 | 0.363 | 9.59 | -- | 1.67 | -0.841 | -- | -- | 0.226 | 5.04 | 20.64 | 21510 | -- | -- |
| 226.15 | 0.703 | 9.68 | -1.03 | -- | -- | -- | -- | -0.0955 | -- | -- | -- | -- | -- |
| 98.84 | 0.465 | 9.64 | -- | 1.72 | -- | -- | -- | -0.0185 | 5.04 | -- | -- | -- | -- |
| 118.04 | 0.506 | 9.58 | -- | -- | -1.37 | -- | -- | 0.351 | -- | 26.3 | 304 | -- | -- |
| 253.95 | 0.744 | 9.66 | -- | -- | -- | -- | -- | 0.0184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.54 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 10 |
| 3 | 49.61 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 10 |
| 4 | 49.65 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 5 |
| 6 | 49.69 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 7 |
| 21 | 49.96 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 23 | 50.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 46 | 50.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 52 | 50.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 77 | 50.58 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 78 | 50.58 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 19 |
| 99 | 50.72 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 109 | 50.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 114 | 50.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 143 | 50.89 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 149 | 50.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 162 | 50.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 200 | 51.09 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 203 | 51.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 312 | 51.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 335 | 51.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 342 | 51.61 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 380 | 51.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 451 | 51.92 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 459 | 51.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 579 | 52.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 661 | 52.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 692 | 52.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 946 | 52.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 19 |