BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0515100 Os02g0515100|AK106640
         (184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0515100  Conserved hypothetical protein                      340   3e-94
Os02g0153300  Conserved hypothetical protein                      163   6e-41
Os02g0155000  Conserved hypothetical protein                      137   4e-33
Os02g0156500  Conserved hypothetical protein                       95   4e-20
Os02g0157300  Conserved hypothetical protein                       69   1e-12

>Os02g0515100 Conserved hypothetical protein
          Length = 184

 Score =  340 bits (873), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 171/184 (92%), Positives = 171/184 (92%)

Query: 1   MQKEEGMCPVKXXXXXXXXXXXXXFSHVVDGNAPVNRLLEIFSTWSGQSDDDESTSCSSP 60
           MQKEEGMCPVK             FSHVVDGNAPVNRLLEIFSTWSGQSDDDESTSCSSP
Sbjct: 1   MQKEEGMCPVKLLLLALIATRLLIFSHVVDGNAPVNRLLEIFSTWSGQSDDDESTSCSSP 60

Query: 61  PRRLKLTSRTTMLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVT 120
           PRRLKLTSRTTMLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVT
Sbjct: 61  PRRLKLTSRTTMLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVT 120

Query: 121 APSTSQMIPSQVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSS 180
           APSTSQMIPSQVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSS
Sbjct: 121 APSTSQMIPSQVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSS 180

Query: 181 TSAR 184
           TSAR
Sbjct: 181 TSAR 184



>Os02g0153300 Conserved hypothetical protein
          Length = 218

 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 111/178 (62%), Gaps = 2/178 (1%)

Query: 7   MCPVKXXXXXXXXXXXXXFSHVVDGNAPVNRLLEIFSTWSGQSDDDESTSCSSPPRRLKL 66
           MCPVK              SHV DGN PVN LLE+FSTW G++  ++ +SC SP R LKL
Sbjct: 1   MCPVKLLLLAFSITRFFIISHVADGNCPVNELLEMFSTWRGRTGVEDGSSCISPLRWLKL 60

Query: 67  TSRTTMLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVTAPSTSQ 126
            SRT ML + I+S G PP+SEL+DRL R + V   RD E+RPSRPLEAS+  VT PS  Q
Sbjct: 61  MSRTVMLLDAINSSGKPPDSELWDRLRRSRPVRLPRDGEIRPSRPLEASETSVTVPSALQ 120

Query: 127 MIPSQVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSSTSAR 184
           + PS +QQS  F HD ARP S   +   RN RR  LSCS+HE  G   + + SS  AR
Sbjct: 121 VTPSHLQQSAAFRHDTARPPSL--ERPERNWRRELLSCSVHELVGEARESNSSSAKAR 176



>Os02g0155000 Conserved hypothetical protein
          Length = 138

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 85/106 (80%), Gaps = 3/106 (2%)

Query: 76  NISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVTAPSTSQMIPSQVQQS 135
           NISS GS  ES+LYDRLSRDKLVSSLRDDEM P RPLEAS   VTAPS+ QMIPSQVQQS
Sbjct: 4   NISSDGSSLESKLYDRLSRDKLVSSLRDDEMHPCRPLEASNSSVTAPSSPQMIPSQVQQS 63

Query: 136 VLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEPTGGQMKLSGSST 181
           VLF HDAARP SC  DS  RN RR  LS S+HEPT G+MK++ S+T
Sbjct: 64  VLFCHDAARPPSC--DSLVRNWRRERLSLSVHEPT-GEMKVNSSNT 106



>Os02g0156500 Conserved hypothetical protein
          Length = 98

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 72  MLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKIL-VTAPSTSQMIPS 130
           ML ++ SS G PP++EL D+ S  K V S RD EM PSRPL+A +I   TAP   Q++PS
Sbjct: 1   MLLDDTSSSGKPPDNELRDKFSLSKPVRSPRDGEMLPSRPLDAREITSTTAPFPLQVMPS 60

Query: 131 QVQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHEP 169
           QVQQSV F HD  RP S   DS  RN RR SLSCS+HEP
Sbjct: 61  QVQQSVPFCHDTPRPPSF--DSPERNWRRDSLSCSVHEP 97



>Os02g0157300 Conserved hypothetical protein
          Length = 158

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 72  MLPENISSGGSPPESELYDRLSRDKLVSSLRDDEMRPSRPLEASKILVTAPSTSQMIPSQ 131
           +L +   S GS P+SEL +RLS  + V   RD E+ PSR LEASKI     S  Q++PS 
Sbjct: 2   LLDDTNPSNGSSPDSELCERLSCSRPVRLPRDGEICPSRALEASKISAILMSALQVMPSH 61

Query: 132 VQQSVLFLHDAARPLSCGGDSSARNRRRVSLSCSMHE 168
           VQQ V F HDA RP S   +  ARN RR   S SM E
Sbjct: 62  VQQFVPFRHDAERPPS--PERPARNWRRTLFSWSMQE 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,788,802
Number of extensions: 272234
Number of successful extensions: 792
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)