BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0131700 Os02g0131700|J033132N07
         (278 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0131700  Nuclear transport factor 2 domain containing p...   518   e-147
AK103571                                                          484   e-137
Os04g0510500  Nuclear transport factor 2 domain containing p...    80   2e-15
Os03g0418800  Nuclear transport factor 2 domain containing p...    73   2e-13
Os04g0372800  Nuclear transport factor 2 domain containing p...    72   3e-13

>Os02g0131700 Nuclear transport factor 2 domain containing protein
          Length = 278

 Score =  518 bits (1334), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/278 (91%), Positives = 255/278 (91%)

Query: 1   MVRVDDLAGTNTTASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEY 60
           MVRVDDLAGTNTTASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEY
Sbjct: 1   MVRVDDLAGTNTTASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEY 60

Query: 61  SHQRKFIQMFFLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVEPGII 120
           SHQRKFIQMFFLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVEPGII
Sbjct: 61  SHQRKFIQMFFLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVEPGII 120

Query: 121 YLFPEYIHEEENQSAVPITSEESDAVENYTYSEPPQQVVSQSDNWGDEPLPEEPISSFTN 180
           YLFPEYIHEEENQSAVPITSEESDAVENYTYSEPPQQVVSQSDNWGDEPLPEEPISSFTN
Sbjct: 121 YLFPEYIHEEENQSAVPITSEESDAVENYTYSEPPQQVVSQSDNWGDEPLPEEPISSFTN 180

Query: 181 GMAMAXXXXXXXXXXXXXXXXXXXXXXXKKTYASILRTAKAPLVFPVAQPAPTRPHQATE 240
           GMAMA                       KKTYASILRTAKAPLVFPVAQPAPTRPHQATE
Sbjct: 181 GMAMAPEEPVQSPPVPPPHVEEPVGEPVKKTYASILRTAKAPLVFPVAQPAPTRPHQATE 240

Query: 241 TNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDEGCPLV 278
           TNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDEGCPLV
Sbjct: 241 TNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDEGCPLV 278



>AK103571 
          Length = 448

 Score =  484 bits (1246), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/273 (89%), Positives = 243/273 (89%), Gaps = 7/273 (2%)

Query: 1   MVRVDDLAGTNTTASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEY 60
           MVRVDDLAGTNTTASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEY
Sbjct: 41  MVRVDDLAGTNTTASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEY 100

Query: 61  SHQRKFIQMFFLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVEPGII 120
           SHQRKFIQMFFLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVE    
Sbjct: 101 SHQRKFIQMFFLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVE---- 156

Query: 121 YLFPEYIHEEENQSAVPITSEESDAVENYTYSEPPQQVVSQSDNWGDEPLPEEPISSFTN 180
              PEYIHEEENQSAVPITSEESDAVENYTYSEPPQQVVSQSDNWGDEPLPEEPISSFTN
Sbjct: 157 ---PEYIHEEENQSAVPITSEESDAVENYTYSEPPQQVVSQSDNWGDEPLPEEPISSFTN 213

Query: 181 GMAMAXXXXXXXXXXXXXXXXXXXXXXXKKTYASILRTAKAPLVFPVAQPAPTRPHQATE 240
           GMAMA                       KKTYASILRTAKAPLVFPVAQPAPTRPHQATE
Sbjct: 214 GMAMAPEEPVQSPPVPPPHVEEPVGEPVKKTYASILRTAKAPLVFPVAQPAPTRPHQATE 273

Query: 241 TNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDE 273
           TNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDE
Sbjct: 274 TNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDE 306



>Os04g0510500 Nuclear transport factor 2 domain containing protein
          Length = 283

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 51/70 (72%)

Query: 23 LIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEYSHQRKFIQMFFLAPQEKGYFVL 82
          +I+S+N  +IE+KTANF+ SWG  + ++V+GLVQ K+Y  +++F Q   LAPQ+ GY+V 
Sbjct: 1  MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60

Query: 83 NDYFHFVDEE 92
          +D F  + +E
Sbjct: 61 SDIFKLICDE 70



>Os03g0418800 Nuclear transport factor 2 domain containing protein
          Length = 488

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 118/279 (42%), Gaps = 42/279 (15%)

Query: 6   DLAGTNTTASTMMDIHSLIMSLNFTQ--IEIKTANFLNSWGDGVLVMVSGLVQTKEYSHQ 63
           D  G     ST  DI+ +I+S++F+    EI+TA+   S  DGVL++V+G + ++     
Sbjct: 50  DSNGVMKYVSTTADINKIILSMDFSNYLTEIETADAQLSHQDGVLIVVTGSLTSEGIC-- 107

Query: 64  RKFIQMFFLAPQEK-GYFVLNDYFHFVDEEQVQPAPVIAQDNFETNMASNSVVE----PG 118
           R+F Q FFLAPQE  GY VLND F F+ E        ++Q+N E N  + ++ E    P 
Sbjct: 108 RRFTQSFFLAPQESGGYVVLNDIFRFIVERPPVAISQVSQEN-ENNQNTATLPETDPNPA 166

Query: 119 IIYLFPEYIHEEENQSAVPITSEESDA--VENYTYS--EPPQQVVSQSDNWGDEPLPEEP 174
              +  E +  E N +   +T+   D   +EN   +  EPP Q+  +         P  P
Sbjct: 167 GDGMISEPVAVENNVAEGEVTNSTVDGTSIENNATAAVEPPVQMTKEEPRKISVAAPPPP 226

Query: 175 ISSFTNGMAMAXXXXXXXXXXXXXXXXXXXXXXXKKTYASILRTAKAPLVFPVAQPAPTR 234
                                             KK+YASI++  K   + PV +P P  
Sbjct: 227 ----------------------------AQKDVTKKSYASIVKVMKEVSLTPVVKPKPAP 258

Query: 235 PHQATETNQAAQHSVMTSSVATEKPKTDVYGEFAVQDDE 273
            H       + + SV +S      P  +   E    +DE
Sbjct: 259 KHVVKTVEASEKPSVKSSQTVEITPNDNNDAENNTSNDE 297



>Os04g0372800 Nuclear transport factor 2 domain containing protein
          Length = 486

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 13  TASTMMDIHSLIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEYSHQRKFIQMFFL 72
           T +TM  I++ I+S++  + EIK  +   S G GV V+V+G + T     +R+F Q FFL
Sbjct: 65  TVTTMEAINAKIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHL-TGSDDVRREFSQSFFL 123

Query: 73  APQEKGYFVLNDYFHFVDEEQVQ 95
           APQEKGYFVLND   +V  E  Q
Sbjct: 124 APQEKGYFVLNDILRYVGGEGDQ 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,438,550
Number of extensions: 315826
Number of successful extensions: 750
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 5
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)