Os04g0510500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear transport factor 2 domain containing protein.
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Os04g0510500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear transport factor 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.09 | 0.258 | 11.2 | -1.22 | 0.393 | 1.11 | 0.171 | -2.13 | -0.0972 | 2.39 | 22.58 | 5358 | -- | -- |
| 30.49 | 0.257 | 11.2 | -0.889 | 0.431 | 1.27 | 0.142 | -- | -0.185 | 2.32 | 16.67 | 9163 | -- | -- |
| 29.59 | 0.253 | 11.3 | -1.16 | 0.403 | 1.03 | -- | -1.55 | -0.26 | 2.44 | 22.39 | 8098 | -- | -- |
| 30.56 | 0.257 | 11.2 | -0.914 | 0.435 | 1.3 | -- | -- | -0.188 | 2.26 | 16.5 | 9133 | -- | -- |
| 38.89 | 0.29 | 11.3 | -1.14 | -- | 1.09 | -- | -1.49 | -0.282 | -- | 22.79 | 8287 | -- | -- |
| 63.56 | 0.374 | 11.1 | -0.175 | 0.47 | -- | 0.226 | -- | 0.25 | 2.04 | -- | -- | -- | -- |
| 63.75 | 0.374 | 11.1 | -0.182 | 0.471 | -- | -- | -- | 0.249 | 2.07 | -- | -- | -- | -- |
| 39.99 | 0.295 | 11.2 | -0.936 | -- | 1.3 | -- | -- | -0.208 | -- | 17.26 | 9741 | -- | -- |
| 40.23 | 0.295 | 11.2 | -- | 0.352 | 0.828 | -- | -- | 0.133 | 2.72 | 22.29 | 2579 | -- | -- |
| 77.04 | 0.41 | 11.1 | -0.162 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 64.62 | 0.376 | 11.1 | -- | 0.467 | -- | -- | -- | 0.269 | 2.06 | -- | -- | -- | -- |
| 46.71 | 0.318 | 11.1 | -- | -- | 0.89 | -- | -- | 0.14 | -- | 22.8 | 2560 | -- | -- |
| 77.74 | 0.412 | 11.1 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 3 | 28.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 19 | 28.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 23 | 28.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 24 | 28.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 26 | 28.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 28 | 28.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 31 | 28.37 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 35 | 28.43 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 42 | 28.70 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 44 | 28.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 45 | 28.72 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 47 | 28.73 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 49 | 28.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 54 | 28.77 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 61 | 28.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 71 | 28.90 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 73 | 28.97 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 74 | 28.97 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 94 | 29.09 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 95 | 29.09 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 97 | 29.10 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 101 | 29.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 102 | 29.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 107 | 29.13 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 122 | 29.22 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 154 | 29.34 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 163 | 29.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 172 | 29.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 173 | 29.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 186 | 29.50 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 227 | 29.64 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 244 | 29.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 252 | 29.78 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 269 | 29.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 280 | 29.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 302 | 29.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 324 | 30.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 334 | 30.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 361 | 30.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 428 | 30.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 444 | 30.42 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 483 | 30.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 498 | 30.50 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 504 | 30.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 516 | 30.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 518 | 30.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 521 | 30.55 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 540 | 30.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 571 | 30.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 601 | 30.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 606 | 30.71 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 607 | 30.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 650 | 30.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 653 | 30.77 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 657 | 30.78 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 659 | 30.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 674 | 30.81 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 687 | 30.84 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 688 | 30.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 708 | 30.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 17 |
| 721 | 30.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 726 | 30.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 17 |
| 730 | 30.92 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 759 | 30.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 773 | 30.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 782 | 30.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 828 | 31.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 21 |
| 882 | 31.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 926 | 31.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 985 | 31.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 995 | 31.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |