BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0510500 Os04g0510500|J065059C03
(283 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43960.1 | chr5:17689154-17691653 REVERSE LENGTH=451 75 4e-14
AT3G25150.2 | chr3:9157161-9160052 REVERSE LENGTH=588 59 2e-09
AT5G60980.2 | chr5:24543988-24546027 FORWARD LENGTH=461 54 1e-07
AT1G13730.1 | chr1:4710519-4712332 FORWARD LENGTH=429 51 9e-07
>AT5G43960.1 | chr5:17689154-17691653 REVERSE LENGTH=451
Length = 450
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 35/208 (16%)
Query: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
M++S+N IEVKT N V+SW G + ++V+G V+ K++ R+ F QT LAPQ+ GY+V
Sbjct: 60 MVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVL 119
Query: 61 SDIFKLICDEYDYYEGADY-SHTDNILQMD----------AHNTMTETASDCMXXXXXXX 109
SD+F + + YY Y S + Q++ + + E ASD +
Sbjct: 120 SDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLEEEASDYVNAVQIKD 179
Query: 110 XXXXXXDIEERGPAFMPENHEVQQQDPLEYGVVIDDDSPSEELTPSFPSSTDSKQDAPLG 169
++E + H+ Q +D E V I +++P EE+
Sbjct: 180 DLVDKYSLQE-------DQHQPQHED-YEDEVAI-EETPREEVAVD-------------- 216
Query: 170 PIVHPSVTTPEEEPMGEPAKQTYASVLR 197
+VH P EEP+GE +K +YAS+L+
Sbjct: 217 -VVHEHRAAPVEEPVGEKSKMSYASILK 243
>AT3G25150.2 | chr3:9157161-9160052 REVERSE LENGTH=588
Length = 587
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
M + V E+ T + +S GG +LVTG + KD VR+ F+QT LAPQ+ GY+V
Sbjct: 170 MALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKD-SVRRTFSQTFFLAPQETGYFVL 228
Query: 61 SDIFKLICDEYDYYEGADYSHTDNILQMDAHNTMTETASDCMXXXXXXXXXXXXXDIEER 120
+D+F+ I DE G +N+ NT +TA+ ++E+
Sbjct: 229 NDMFRFI-DEGTVVHGNQIP-VNNV--QAPVNTYQDTAA---------AKEIPDDFVQEK 275
Query: 121 GPAFMPENHEVQQQDPLEYGVVIDDDSPSEELTPSFPSSTDSKQDAPLGPIVHPS----- 175
++ ENH V+Q + L + + P + TPS + ++A + V+ +
Sbjct: 276 ---YVQENHAVKQTEVLSKSI----NEPEKVFTPSEDEQVSAAEEALVTETVNEAPIEVQ 328
Query: 176 VTTPEEEPMGEPAKQTYASVLR 197
+ GE K++YAS+++
Sbjct: 329 KVGESDSRTGEIPKRSYASIVK 350
>AT5G60980.2 | chr5:24543988-24546027 FORWARD LENGTH=461
Length = 460
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 11 EVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVFSDIFKLI 67
E++TA+ +S + +LVTG + D VRK+F+Q+ LAPQD GY+V +D+F+ +
Sbjct: 77 EIETADAQESHERGVIVLVTGRLTGNDN-VRKKFSQSFFLAPQDKGYFVLNDVFRFL 132
>AT1G13730.1 | chr1:4710519-4712332 FORWARD LENGTH=429
Length = 428
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
M + KI++ TA+ S+ + LVTGL+ +K+ R RF+Q+ L P + Y+V
Sbjct: 67 MSFDYEISKIQILTADSQASYMNGVVTLVTGLLTVKEGQ-RMRFSQSFFLVPLNGSYFVL 125
Query: 61 SDIFKLICDE 70
+D+F+ + DE
Sbjct: 126 NDVFRYVADE 135
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,935,392
Number of extensions: 247173
Number of successful extensions: 723
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 4
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)