BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0510500 Os04g0510500|J065059C03
(283 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0510500 Nuclear transport factor 2 domain containing p... 560 e-160
AK103571 80 1e-15
Os02g0131700 Nuclear transport factor 2 domain containing p... 80 2e-15
>Os04g0510500 Nuclear transport factor 2 domain containing protein
Length = 283
Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/283 (95%), Positives = 270/283 (95%)
Query: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF
Sbjct: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
Query: 61 SDIFKLICDEYDYYEGADYSHTDNILQMDAHNTMTETASDCMXXXXXXXXXXXXXDIEER 120
SDIFKLICDEYDYYEGADYSHTDNILQMDAHNTMTETASDCM DIEER
Sbjct: 61 SDIFKLICDEYDYYEGADYSHTDNILQMDAHNTMTETASDCMPEELEAKEALAPADIEER 120
Query: 121 GPAFMPENHEVQQQDPLEYGVVIDDDSPSEELTPSFPSSTDSKQDAPLGPIVHPSVTTPE 180
GPAFMPENHEVQQQDPLEYGVVIDDDSPSEELTPSFPSSTDSKQDAPLGPIVHPSVTTPE
Sbjct: 121 GPAFMPENHEVQQQDPLEYGVVIDDDSPSEELTPSFPSSTDSKQDAPLGPIVHPSVTTPE 180
Query: 181 EEPMGEPAKQTYASVLRTKGHPSHQAIHSIPLNKATASSVESQLNGHMTKQVQPVHEKAN 240
EEPMGEPAKQTYASVLRTKGHPSHQAIHSIPLNKATASSVESQLNGHMTKQVQPVHEKAN
Sbjct: 181 EEPMGEPAKQTYASVLRTKGHPSHQAIHSIPLNKATASSVESQLNGHMTKQVQPVHEKAN 240
Query: 241 LDTRYDASGPEDEGLAFVYNFANASDHFIMIFFEIVLLLLLAY 283
LDTRYDASGPEDEGLAFVYNFANASDHFIMIFFEIVLLLLLAY
Sbjct: 241 LDTRYDASGPEDEGLAFVYNFANASDHFIMIFFEIVLLLLLAY 283
>AK103571
Length = 448
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 51/70 (72%)
Query: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
+I+S+N +IE+KTANF+ SWG + ++V+GLVQ K+Y +++F Q LAPQ+ GY+V
Sbjct: 63 LIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEYSHQRKFIQMFFLAPQEKGYFVL 122
Query: 61 SDIFKLICDE 70
+D F + +E
Sbjct: 123 NDYFHFVDEE 132
>Os02g0131700 Nuclear transport factor 2 domain containing protein
Length = 278
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 51/70 (72%)
Query: 1 MIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQLKDYPVRKRFAQTMLLAPQDNGYYVF 60
+I+S+N +IE+KTANF+ SWG + ++V+GLVQ K+Y +++F Q LAPQ+ GY+V
Sbjct: 23 LIMSLNFTQIEIKTANFLNSWGDGVLVMVSGLVQTKEYSHQRKFIQMFFLAPQEKGYFVL 82
Query: 61 SDIFKLICDE 70
+D F + +E
Sbjct: 83 NDYFHFVDEE 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,146,941
Number of extensions: 383063
Number of successful extensions: 1284
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 3
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)