Os02g0131700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear transport factor 2 domain containing protein.
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Os02g0131700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear transport factor 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.3 | 0.201 | 12.4 | 1.12 | 0.431 | -0.615 | 0.142 | 0.953 | 0.302 | 21.3 | 24.42 | 1148 | -- | -- |
| 18.63 | 0.201 | 12.5 | 0.886 | 0.431 | -0.523 | 0.214 | -- | 0.24 | 21.3 | 24.4 | 1132 | -- | -- |
| 18.37 | 0.2 | 12.4 | 1.11 | 0.43 | -0.615 | -- | 0.964 | 0.301 | 21.4 | 24.43 | 1148 | -- | -- |
| 18.79 | 0.202 | 12.5 | 0.876 | 0.425 | -0.519 | -- | -- | 0.238 | 21.3 | 24.4 | 1143 | -- | -- |
| 26.68 | 0.241 | 12.4 | 1.09 | -- | -0.517 | -- | 0.704 | 0.31 | -- | 23.7 | 1403 | -- | -- |
| 27.03 | 0.244 | 12.5 | 0.729 | 0.36 | -- | 0.196 | -- | 0.171 | 20.4 | -- | -- | -- | -- |
| 27.15 | 0.244 | 12.5 | 0.722 | 0.359 | -- | -- | -- | 0.171 | 20.5 | -- | -- | -- | -- |
| 26.86 | 0.241 | 12.5 | 0.88 | -- | -0.45 | -- | -- | 0.264 | -- | 23 | 1411 | -- | -- |
| 37.21 | 0.284 | 12.5 | -- | 0.389 | -0.311 | -- | -- | 0.0459 | 21 | 28.38 | 1083 | -- | -- |
| 34.37 | 0.274 | 12.5 | 0.721 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 40.9 | 0.299 | 12.5 | -- | 0.357 | -- | -- | -- | 0.0904 | 20.6 | -- | -- | -- | -- |
| 45.19 | 0.313 | 12.5 | -- | -- | -0.235 | -- | -- | 0.0586 | -- | 28.36 | 1353 | -- | -- |
| 48.07 | 0.324 | 12.5 | -- | -- | -- | -- | -- | 0.0874 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 18.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 7 | 18.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 15 | 18.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 27 | 19.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 31 | 19.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 16 |
| 60 | 19.07 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 161 | 19.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 187 | 19.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 262 | 19.21 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 351 | 19.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 356 | 19.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 363 | 19.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 375 | 19.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 504 | 19.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 609 | 19.73 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 729 | 19.81 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 997 | 19.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 998 | 19.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |