BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0116800 Os02g0116800|AK102604
(510 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0116800 Remorin, C-terminal region domain containing p... 852 0.0
Os03g0120200 Remorin, C-terminal region domain containing p... 268 7e-72
Os04g0620200 Remorin, C-terminal region domain containing p... 158 9e-39
AK101665 143 2e-34
Os12g0613600 Remorin, C-terminal region domain containing p... 135 7e-32
Os11g0616300 Remorin, C-terminal region domain containing p... 70 5e-12
>Os02g0116800 Remorin, C-terminal region domain containing protein
Length = 510
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/510 (83%), Positives = 427/510 (83%)
Query: 1 MEYERIEKPFPTQGGGFSPKRLRAMLLXXXXXXXXXXXXXXXXXXXXXXXXXXVPKXXXX 60
MEYERIEKPFPTQGGGFSPKRLRAMLL VPK
Sbjct: 1 MEYERIEKPFPTQGGGFSPKRLRAMLLGVEKRRKGQEEEEEGDAGEVDDEYGAVPKSSVR 60
Query: 61 XXXXXXXXXXXXMCEEYKDVDVVXXXXXXXXXXXXXXXHRSRDTHSMGSRVRVPEEDSCD 120
MCEEYKDVDVV HRSRDTHSMGSRVRVPEEDSCD
Sbjct: 61 SDADSDARRGGSMCEEYKDVDVVSTISESSSSLETGSGHRSRDTHSMGSRVRVPEEDSCD 120
Query: 121 SESVASNFEFHKERGASARSVTAAIVPPFSKPAPSKWDDAQKWIASPTTNRPGRAGGVPQ 180
SESVASNFEFHKERGASARSVTAAIVPPFSKPAPSKWDDAQKWIASPTTNRPGRAGGVPQ
Sbjct: 121 SESVASNFEFHKERGASARSVTAAIVPPFSKPAPSKWDDAQKWIASPTTNRPGRAGGVPQ 180
Query: 181 RKMEKTSFGGGRLPATKVVLEATEEIDTKRVDPSQEKREIGWQKAVNWAPPDPYPEVETC 240
RKMEKTSFGGGRLPATKVVLEATEEIDTKRVDPSQEKREIGWQKAVNWAPPDPYPEVETC
Sbjct: 181 RKMEKTSFGGGRLPATKVVLEATEEIDTKRVDPSQEKREIGWQKAVNWAPPDPYPEVETC 240
Query: 241 AKSALAEEITVADSAVTFSRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMTPIASQEP 300
AKSALAEEITVADSAVTFSRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMTPIASQEP
Sbjct: 241 AKSALAEEITVADSAVTFSRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMTPIASQEP 300
Query: 301 SRTGTPVRATSPDCSRPTTPRKTIGPNAIGAVIGHGECSNVELSEQELQMKTRREIMLLG 360
SRTGTPVRATSPDCSRPTTPRKTIGPNAIGAVIGHGECSNVELSEQELQMKTRREIMLLG
Sbjct: 301 SRTGTPVRATSPDCSRPTTPRKTIGPNAIGAVIGHGECSNVELSEQELQMKTRREIMLLG 360
Query: 361 TQLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRXXXXXXXXXXXYLARFKRE 420
TQLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIR YLARFKRE
Sbjct: 361 TQLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRAAAWEEAEKAKYLARFKRE 420
Query: 421 EIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADEXXXXXXXXXX 480
EIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADE
Sbjct: 421 EIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADEKRAAAELKRS 480
Query: 481 XXXXXTAEQADHIRRTGRMPSSIGCWNWCS 510
TAEQADHIRRTGRMPSSIGCWNWCS
Sbjct: 481 RAAAKTAEQADHIRRTGRMPSSIGCWNWCS 510
>Os03g0120200 Remorin, C-terminal region domain containing protein
Length = 423
Score = 268 bits (685), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 165/373 (44%), Positives = 210/373 (56%), Gaps = 59/373 (15%)
Query: 144 AIVPPFSKPAPSKWDDAQKWIASPTTNRPGR----AGGVPQRKMEKTSFGGGRLPAT-KV 198
A++PPFS+P PSKWDDA+KWI+SPT NR GR AG P++ R PA KV
Sbjct: 102 ALLPPFSRPTPSKWDDAEKWISSPTANRGGRVGSAAGAAPKKSALAFPEHVSRPPAVAKV 161
Query: 199 VLEATEEIDTKRVDPSQEKREIGWQKAVNWAPPDPYPEVETCAKSALAEEITVADSAVTF 258
V E I+T T+ ++V
Sbjct: 162 VAEVP--INTG----------------------------------------TLVKNSVAL 179
Query: 259 SRHDSSATLQSATTCIPPPPTVRSVSMRDMGTEMTPIASQEPSRTGTPVRATSPDCSRPT 318
++ S QSA+ P P VRSVSMRDMGTEMTPIASQEPSRTGTP+ A+SP SR
Sbjct: 180 AQPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMTPIASQEPSRTGTPIIASSPTSSRTP 239
Query: 319 TPRKTIGPNAIGAVIGHGEC--SNVELSEQELQMKTRREIMLLGTQLGKTNIAAWASNKE 376
TP++ A I GE + +E+SE+ELQM TR+EIM LG +LGKT IAAWAS +E
Sbjct: 240 TPQRN-------AEISIGEFGPNKMEMSEEELQMNTRKEIMDLGQRLGKTTIAAWASKEE 292
Query: 377 EEKDASLSLKGVPMDQSTQKVTEIRXXXXXXXXXXXYLARFKREEIKIQAWEDHQRAKIE 436
+ ++ S V D++ + E R YLARF+REE+KIQAWE+HQ+AKIE
Sbjct: 293 K---STTSFANVITDKAVEIDREARAADWEEAEKAKYLARFQREEVKIQAWENHQKAKIE 349
Query: 437 AEMRKIEVDVERMRARAQDKLMSQLASARHTADEXXXXXXXXXXXXXXXTAEQADHIRRT 496
AEM+++E +E RAR QD+L S+LA+ARH A+ T EQA IR+T
Sbjct: 350 AEMKRMEAKIEIKRAREQDRLSSKLAAARHKAEARREAAESRKNQEAARTEEQAAQIRKT 409
Query: 497 GRMPSSIGCWNWC 509
G +PSSI CW WC
Sbjct: 410 GHIPSSISCWCWC 422
>Os04g0620200 Remorin, C-terminal region domain containing protein
Length = 284
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 157/282 (55%), Gaps = 22/282 (7%)
Query: 246 AEEITVADSAVTFSRHDSSATLQSATTCIPPP------PTVRSVSMRDMGTEMTPIASQE 299
A+ TV ++ VT S + + AT S++ I P P V SVS+RD+GTEMTPI SQ+
Sbjct: 3 ADVCTVNNAGVT-SEYQTKATDNSSSIEIRPYKDPKAIPAVHSVSVRDVGTEMTPIPSQD 61
Query: 300 PSRTGTPVRAT----SPDCSRPTTP---RKTIGP---NAIGAVIGHGECSNVELSEQELQ 349
PSRTGTP+ + SP+CS P+TP R T P N + + E+S+ E++
Sbjct: 62 PSRTGTPLGSMTPTRSPNCSIPSTPVGGRSTASPGDDNTDDGPYFNRKGGTNEISDDEMR 121
Query: 350 MKTRREIMLLGTQLGKTNIAAWASNKEEEK-DASLSLKGVPMDQSTQKVTEIRXXXXXXX 408
+KTR+EI LG QLGK NIA WAS +E E AS S+ + + +K R
Sbjct: 122 LKTRKEIAALGIQLGKMNIATWASKEELELVSASPSIADL---ERMKKEYAARAAAYEEA 178
Query: 409 XXXXYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTA 468
+ ARFK+EE+KI+AWE Q+AKIE+EM++IE E++R+ A K+ +L R A
Sbjct: 179 ENFKHTARFKKEELKIEAWESLQKAKIESEMKRIEEHAEKLRSEAMAKMAEKLEMTRRLA 238
Query: 469 DEXXXXXXXXXXXXXXXTAEQADHIRRTGRMPSS-IGCWNWC 509
+E +A+ IR+TGR+P S I C + C
Sbjct: 239 EEKRASANARMNQQAAKAVHKAELIRQTGRVPGSCILCCSGC 280
>AK101665
Length = 361
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 172/359 (47%), Gaps = 52/359 (14%)
Query: 151 KPAPSKWDDAQKWIASPTTNRPGRAGGVPQRKME-KTSFGGGRLPATKVVLEATEE--ID 207
KP PSKWDDAQKW+ S + G G+ K+ + S R +++ +++ +
Sbjct: 36 KPTPSKWDDAQKWLVSLSNGGGGGVDGIHSGKVRPRNSNADDR----RLLSSSSQNGRVS 91
Query: 208 TKRVDPSQEKREIGWQKAVNWAPPDPYPEVETCAKSALAEEITVADSAVTFSRHDSSATL 267
VD + E + APP P P++ A ++E + D + +H S
Sbjct: 92 CSSVDGALEYNLVA-------APPTP-PQLGEAAADDVSETKKI-DYCMVQPQHGS---- 138
Query: 268 QSATTCIPPPPTVRSVSMRDMGTEMTPIASQEPSRTGTPVRAT-----SPDCSRPTTPRK 322
P +RSV +RDMGTEMTPIAS+EPSR+ TP+RA+ SP SRP+TP +
Sbjct: 139 --------PAAVLRSVCLRDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSRPSTPGR 190
Query: 323 TIGPNAIGAVIGHGECSNVELSEQELQMKTRREIMLLGTQLGKTNIAAWASNKEEEKDAS 382
A+G ++ +T + + G A D S
Sbjct: 191 RRYDVAVGVTA-------------VVESRTAEPVAVGSVSDGGGFGGGCAV------DES 231
Query: 383 LSLKGVPMDQSTQKVTEIRXXXXXXXXXXXYLARFKREEIKIQAWEDHQRAKIEAEMRKI 442
S QST E R + AR+KREE+KIQAWE+H++ K E EM+KI
Sbjct: 232 SSGGFGNHAQSTTTGLESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKI 291
Query: 443 EVDVERMRARAQDKLMSQLASARHTADEXXXXXXXXXXXXXXXTAEQADHIRRTGRMPS 501
E+ E+M+ARA +KL ++LA+AR A+E T ++AD+IRRTG +PS
Sbjct: 292 EMKAEQMKARAHEKLANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPS 350
>Os12g0613600 Remorin, C-terminal region domain containing protein
Length = 427
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 125/243 (51%), Gaps = 29/243 (11%)
Query: 282 SVSMRDMGTEMTPIASQEPSRTGTPVRAT----SPDCSRPTTPRKTIGPNAIGAVIGHGE 337
+VSMRD+GTEMTP+AS+E SR+GTP A SP CS PT+PR
Sbjct: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGA-------------A 241
Query: 338 CSNVELSEQELQMKTRREIMLLGTQLGKTNIAAWASNKEEEK-----------DASLSLK 386
++ SE+ELQ++TRREI LG QLGK NIA+WAS ++++
Sbjct: 242 SASSASSERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKRPRPRPRPHS 301
Query: 387 GVPMDQSTQKVTEIRXXXXXXXXXXXYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDV 446
G ++ ++ E R RF+R+E+KIQ WE Q+AK EA+MR EV
Sbjct: 302 GDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQA 361
Query: 447 ERMRARAQDKLMSQLASARHTADEXXXXXXXXXXXXXXXTAEQADHIRRTGRMPSSI-GC 505
E+M+ARA+ KL +L++ H A+ A Q IR TG PS + C
Sbjct: 362 EQMKARAKQKLSRRLSALSHKAEGKQARVEARRSRQAARLARQVHRIRETGAAPSRLRRC 421
Query: 506 WNW 508
+W
Sbjct: 422 CSW 424
>Os11g0616300 Remorin, C-terminal region domain containing protein
Length = 493
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 286 RDMGTEMTPIASQEPSRTGTPVRATSPDCSRPTTPRKTIGPNAIGAVIGHGECSNVELSE 345
RD+GTEMTP+ S SR TP+++TSP +R TP GP ++ + +
Sbjct: 253 RDIGTEMTPLGSSTTSRCHTPIKSTSP--ARHNTPASRSGP-----LVPYAGGGGGAGQD 305
Query: 346 QELQMKTRREIMLLGTQLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRXXXX 405
+ LG Q I W+S +EEE++ S SL+ + S V E R
Sbjct: 306 ISDLADCHFAKLDLGAQFDAMLIN-WSSKEEEEEEVSKSLRH--FEASVAAVGEKRGGAG 362
Query: 406 ----XXXXXXXYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQL 461
R++REE KIQAW + + AK EA+ RK+EV +++MR+ ++KLM ++
Sbjct: 363 DCRWEDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRRM 422
Query: 462 ASARHTADE 470
+ A+E
Sbjct: 423 TTVHRRAEE 431
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.126 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,702,311
Number of extensions: 631719
Number of successful extensions: 2503
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2487
Number of HSP's successfully gapped: 9
Length of query: 510
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 405
Effective length of database: 11,553,331
Effective search space: 4679099055
Effective search space used: 4679099055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)