BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0962300 Os01g0962300|Os01g0962300
(165 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteo... 241 2e-64
Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteo... 207 2e-54
Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteo... 207 4e-54
Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteo... 206 7e-54
Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteo... 205 1e-53
>Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 127/165 (76%)
Query: 1 MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV 60
MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV
Sbjct: 1 MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXX 120
MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVH
Sbjct: 61 MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAG 120
Query: 121 XRANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
RANAQQPKLFVGMILILIFAEA SSRAGQSRAH
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSRAGQSRAH 165
>Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 116/165 (70%)
Query: 1 MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV 60
MSS F+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVV
Sbjct: 1 MSSVFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXX 120
MAGVLGIYGLIIAVII+TGINP A PYY FDG H
Sbjct: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120
Query: 121 XRANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
RANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 116/165 (70%)
Query: 1 MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV 60
MSS F+GDE APF GF+GAA AL+FSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVV
Sbjct: 1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 60
Query: 61 MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXX 120
MAGVLGIYGLIIAVII+TGINP A PYY FDG H
Sbjct: 61 MAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAG 120
Query: 121 XRANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
RANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 166
Score = 206 bits (524), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 116/164 (70%)
Query: 2 SSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVM 61
SSTF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVM
Sbjct: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
Query: 62 AGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXXX 121
AGVLGIYGLIIAVII+TGINP A PY+ FDG H
Sbjct: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 122
Query: 122 RANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
RANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 123 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 166
>Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 167
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 116/164 (70%)
Query: 2 SSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVM 61
+STF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVM
Sbjct: 4 ASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
Query: 62 AGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHXXXXXXXXXXXXXXXXXXXXXXXXXX 121
AGVLGIYGLIIAVII+TGINP A PY+ FDG H
Sbjct: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 123
Query: 122 RANAQQPKLFVGMILILIFAEAXXXXXXXXXXXXSSRAGQSRAH 165
RANAQQPKLFVGMILILIFAEA SSRAGQSRA
Sbjct: 124 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 167
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,668,415
Number of extensions: 112656
Number of successful extensions: 388
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 5
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)