BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0961200 Os01g0961200|AK105424
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0961200 CBS domain containing protein 985 0.0
Os12g0169400 CBS domain containing protein 586 e-167
Os01g0923300 CBS domain containing protein 262 4e-70
Os11g0496400 Octicosapeptide/Phox/Bem1p domain containing p... 127 2e-29
Os11g0170300 Hypothetical protein 104 1e-22
>Os01g0961200 CBS domain containing protein
Length = 533
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/533 (90%), Positives = 485/533 (90%)
Query: 1 MAAAAASQPRSHQPTSLRRXXXXXXXXXXXEPNEKASNSKPASPVQAPSPERTVKKLRLA 60
MAAAAASQPRSHQPTSLRR EPNEKASNSKPASPVQAPSPERTVKKLRLA
Sbjct: 1 MAAAAASQPRSHQPTSLRRAPPPSSAAAKPEPNEKASNSKPASPVQAPSPERTVKKLRLA 60
Query: 61 KALTLPEATSVSEACRRMALKRVDAALLTDSNGMLSGILTAEDISGRVIAEGLRPDETNV 120
KALTLPEATSVSEACRRMALKRVDAALLTDSNGMLSGILTAEDISGRVIAEGLRPDETNV
Sbjct: 61 KALTLPEATSVSEACRRMALKRVDAALLTDSNGMLSGILTAEDISGRVIAEGLRPDETNV 120
Query: 121 AKAMTRNPVFVMSNSPAIEALQKMVKGKFRHLPVVEHGEVIAMLDITKFLYDAISRMEKA 180
AKAMTRNPVFVMSNSPAIEALQKMVKGKFRHLPVVEHGEVIAMLDITKFLYDAISRMEKA
Sbjct: 121 AKAMTRNPVFVMSNSPAIEALQKMVKGKFRHLPVVEHGEVIAMLDITKFLYDAISRMEKA 180
Query: 181 AEQGSAIAAAMEGVERQWGNDFPGPHSFIENLRDQLFKPSLSTIITENNXXXXXXXXXXX 240
AEQGSAIAAAMEGVERQWGNDFPGPHSFIENLRDQLFKPSLSTIITENN
Sbjct: 181 AEQGSAIAAAMEGVERQWGNDFPGPHSFIENLRDQLFKPSLSTIITENNSVPVVSPSDPV 240
Query: 241 IAAAKKMREYRVNSVVVMTGNMLLGILTSKDLVLRLVAQSLSPDVTLVEKVMTTNPDCAT 300
IAAAKKMREYRVNSVVVMTGNMLLGILTSKDLVLRLVAQSLSPDVTLVEKVMTTNPDCAT
Sbjct: 241 IAAAKKMREYRVNSVVVMTGNMLLGILTSKDLVLRLVAQSLSPDVTLVEKVMTTNPDCAT 300
Query: 301 LDTSILEALHSMQDGKYLHIPVADKNGQIIACLDALQLTHAAISMVEGASEANSMANTMM 360
LDTSILEALHSMQDGKYLHIPVADKNGQIIACLDALQLTHAAISMVEGASEANSMANTMM
Sbjct: 301 LDTSILEALHSMQDGKYLHIPVADKNGQIIACLDALQLTHAAISMVEGASEANSMANTMM 360
Query: 361 QKFWDSALALQPXXXXXXXXXXXXMATSDNAEGKHIPPHVGNSFSFKLQDRKGRMHRFSC 420
QKFWDSALALQP MATSDNAEGKHIPPHVGNSFSFKLQDRKGRMHRFSC
Sbjct: 361 QKFWDSALALQPAEESDARSEESRMATSDNAEGKHIPPHVGNSFSFKLQDRKGRMHRFSC 420
Query: 421 VSESLDELVSAVSYRLGMEKEKINLLYDDDEGDRVVLTTDGDLSAAIQHARSAGWKVLRL 480
VSESLDELVSAVSYRLGMEKEKINLLYDDDEGDRVVLTTDGDLSAAIQHARSAGWKVLRL
Sbjct: 421 VSESLDELVSAVSYRLGMEKEKINLLYDDDEGDRVVLTTDGDLSAAIQHARSAGWKVLRL 480
Query: 481 HMDEPWSNGEHTTSLVNTSPVKTGRSFLRLXXXXXXXXXXXXXXIFYLKRSEL 533
HMDEPWSNGEHTTSLVNTSPVKTGRSFLRL IFYLKRSEL
Sbjct: 481 HMDEPWSNGEHTTSLVNTSPVKTGRSFLRLGIAAGAVAVASMGVIFYLKRSEL 533
>Os12g0169400 CBS domain containing protein
Length = 542
Score = 586 bits (1511), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/503 (58%), Positives = 377/503 (74%), Gaps = 8/503 (1%)
Query: 38 NSKPASPVQAPSPERTVKKLRLAKALTLPEATSVSEACRRMALKRVDAALLTDSNGMLSG 97
+SKP SP Q + ERTV+KLRL+KALT+PE T+VSEACRRMA +RVDA LLTD+ G+LSG
Sbjct: 41 SSKPTSPGQL-TGERTVRKLRLSKALTIPEGTTVSEACRRMAARRVDAVLLTDAQGLLSG 99
Query: 98 ILTAEDISGRVIAEGLRPDETNVAKAMTRNPVFVMSNSPAIEALQKMVKGKFRHLPVVEH 157
I+T +D++ RV+AEGLR ++T ++K MTRNP + MS++ AIEALQKMV+GKFRHLPVVE+
Sbjct: 100 IVTDKDVATRVVAEGLRVEQTIMSKIMTRNPTYAMSDTLAIEALQKMVQGKFRHLPVVEN 159
Query: 158 GEVIAMLDITKFLYDAISRMEKAAEQGSAIAAAMEGVERQWGNDFPGPHSFIENLRDQLF 217
GEVIAMLDI K LYDAISR+EKAAEQGSAIAAA+EGVERQ G +F P++FIE LR+++F
Sbjct: 160 GEVIAMLDIAKCLYDAISRLEKAAEQGSAIAAAVEGVERQLGGNFSAPYAFIETLRERMF 219
Query: 218 KPSLSTIITENNXXXXXXXXXXXIAAAKKMREYRVNSVVVMTGNMLLGILTSKDLVLRLV 277
KPSLSTI+TE A +KMRE+RVNSVVV TGN L GI TSKDL++R+V
Sbjct: 220 KPSLSTIVTEGTKVAIVSPSDPVYVATQKMREFRVNSVVVATGNTLQGIFTSKDLLMRVV 279
Query: 278 AQSLSPDVTLVEKVMTTNPDCATLDTSILEALHSMQDGKYLHIPVADKNGQIIACLDALQ 337
AQ+LSP++TLVEKVMT NPD ATLDT+IL+ALH M DGK+LHIPV D+ GQI ACLD LQ
Sbjct: 280 AQNLSPELTLVEKVMTVNPDFATLDTTILDALHIMHDGKFLHIPVLDREGQIAACLDVLQ 339
Query: 338 LTHAAISMVEGASE-ANSMANTMMQKFWDSALALQ-PXXXXXXXXXXXXMATSDNAEGKH 395
LTHAAI +VEG ++ N +ANT+MQ+FWDS LAL+ P + S+ +GK
Sbjct: 340 LTHAAIQLVEGGNDTVNDVANTVMQRFWDSTLALESPDEECDSRSEVSLLLASETGDGKS 399
Query: 396 --IPPHVGNSFSFKLQDRKGRMHRFSCVSESLDELVSAVSYRLGMEKEK--INLLYDDDE 451
PP +GNSF+FKLQD+KGR+HRF+C SESL+EL S++ RL + E+ + LLY+DDE
Sbjct: 400 SIYPPVIGNSFAFKLQDQKGRVHRFTCGSESLNELASSIKQRLSITDEEGIMQLLYEDDE 459
Query: 452 GDRVVLTTDGDLSAAIQHARSAGWKVLRLHMDEPWSNGEHTTSLVNTSPVKTGR-SFLRL 510
GDRV+LTTD DL+ A+ HA+S+G KVL+LH+D S+ E T + + R S +R+
Sbjct: 460 GDRVLLTTDADLAGAVLHAKSSGLKVLKLHIDLSESSTEVTKPSQQLAAARRSRLSPVRV 519
Query: 511 XXXXXXXXXXXXXXIFYLKRSEL 533
+ YLKR+++
Sbjct: 520 GLMAGVVALSGAAVMVYLKRAKV 542
>Os01g0923300 CBS domain containing protein
Length = 238
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 124/184 (67%), Positives = 159/184 (86%)
Query: 46 QAPSPERTVKKLRLAKALTLPEATSVSEACRRMALKRVDAALLTDSNGMLSGILTAEDIS 105
Q+ + ERTVK+LRL+KALT+P+ T+V EACRRMA +RVDA LLTDSN +L GILT +DI+
Sbjct: 54 QSMTGERTVKRLRLSKALTIPDHTTVYEACRRMAARRVDAVLLTDSNALLCGILTDKDIT 113
Query: 106 GRVIAEGLRPDETNVAKAMTRNPVFVMSNSPAIEALQKMVKGKFRHLPVVEHGEVIAMLD 165
RVIA L+ +ET V+K MTRNP+FV+S++ A+EALQKMV+GKFRHLPVVE+GEVIA+LD
Sbjct: 114 TRVIARELKLEETPVSKVMTRNPLFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLD 173
Query: 166 ITKFLYDAISRMEKAAEQGSAIAAAMEGVERQWGNDFPGPHSFIENLRDQLFKPSLSTII 225
I K LYDAI+RME+AAE+G AIAAA+EGVE+ WG GP++FIE LR+++F+PSLSTII
Sbjct: 174 IAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGASVSGPNTFIETLRERMFRPSLSTII 233
Query: 226 TENN 229
+EN+
Sbjct: 234 SENS 237
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 243 AAKKMREYRVNSVVVMTGNMLL-GILTSKDLVLRLVAQSLSPDVTLVEKVMTTNPDCATL 301
A ++M RV++V++ N LL GILT KD+ R++A+ L + T V KVMT NP
Sbjct: 82 ACRRMAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLS 141
Query: 302 DTSILEALHSMQDGKYLHIPVADKNGQIIACLDALQLTHAAISMVEGASE---ANSMANT 358
DT +EAL M GK+ H+PV + NG++IA LD + + AI+ +E A+E A + A
Sbjct: 142 DTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 200
Query: 359 MMQKFWDSALA 369
++K W ++++
Sbjct: 201 GVEKHWGASVS 211
>Os11g0496400 Octicosapeptide/Phox/Bem1p domain containing protein
Length = 222
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 9/162 (5%)
Query: 334 DALQLTHAAISMVEGASEA---NSMANTMMQKFWDSALALQPXXXXXXXXXXXXMATSDN 390
D + +THAA S+VEG + + A +M+Q+FWDSA+AL P A+
Sbjct: 1 DVIDITHAAFSIVEGNGDGAVNDDAAISMVQRFWDSAMALGPLDDEIESQSQISEASRSQ 60
Query: 391 AEGKHIPPHVGNSFSFKLQDRKGRMHRFSCVSESLDELVSAVSYRLGMEKEKINL---LY 447
H SFSFKLQDR+GRMHRFSC +SL L++ + RLG + ++ +L LY
Sbjct: 61 MMSD---IHNEQSFSFKLQDRRGRMHRFSCEVQSLTPLITCILQRLGPDLDRDHLPQILY 117
Query: 448 DDDEGDRVVLTTDGDLSAAIQHARSAGWKVLRLHMDEPWSNG 489
+D++ D+VVL +D DL+AA+ HAR AGWK L+L++D S+G
Sbjct: 118 EDEDRDKVVLASDDDLTAAVDHARLAGWKGLKLYLDYSGSSG 159
>Os11g0170300 Hypothetical protein
Length = 97
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/60 (81%), Positives = 55/60 (91%)
Query: 145 VKGKFRHLPVVEHGEVIAMLDITKFLYDAISRMEKAAEQGSAIAAAMEGVERQWGNDFPG 204
V GKFRHLPVVE+GEVIAMLDI K LYDAISR+EKAAEQGSA+AAA+EGVERQ G++ PG
Sbjct: 4 VLGKFRHLPVVENGEVIAMLDIAKCLYDAISRLEKAAEQGSALAAAVEGVERQVGDNLPG 63
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,276,484
Number of extensions: 573561
Number of successful extensions: 1759
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1745
Number of HSP's successfully gapped: 6
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)