Os01g0961200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os01g0961200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.21 | 0.382 | 7.92 | 0.908 | 0.884 | -2.67 | -0.672 | -1.37 | 0.349 | 8.28 | 14.58 | 117 | -- | -- |
| 67.71 | 0.383 | 7.89 | 1.11 | 0.87 | -2.73 | -0.725 | -- | 0.407 | 8.3 | 12.49 | 123 | -- | -- |
| 67.57 | 0.383 | 7.92 | 0.865 | 0.891 | -2.62 | -- | -1.46 | 0.338 | 8.22 | 14.7 | 114 | -- | -- |
| 69.29 | 0.388 | 7.89 | 1.08 | 0.887 | -2.69 | -- | -- | 0.397 | 8.14 | 12.27 | 122 | -- | -- |
| 92.44 | 0.448 | 7.91 | 1.01 | -- | -2.8 | -- | -0.836 | 0.428 | -- | 16 | 327 | -- | -- |
| 139.69 | 0.554 | 7.97 | 0.519 | 1.34 | -- | 0.458 | -- | 0.0266 | 5.92 | -- | -- | -- | -- |
| 140.18 | 0.554 | 7.97 | 0.524 | 1.35 | -- | -- | -- | 0.0251 | 5.99 | -- | -- | -- | -- |
| 92.72 | 0.448 | 7.9 | 1.18 | -- | -2.81 | -- | -- | 0.476 | -- | 16.26 | 334 | -- | -- |
| 96.73 | 0.458 | 7.93 | -- | 0.956 | -2.15 | -- | -- | 0.214 | 7.5 | 10.21 | 122 | -- | -- |
| 234.18 | 0.715 | 7.99 | 0.563 | -- | -- | -- | -- | 0.0558 | -- | -- | -- | -- | -- |
| 147.41 | 0.568 | 7.99 | -- | 1.35 | -- | -- | -- | -0.0333 | 5.97 | -- | -- | -- | -- |
| 124.01 | 0.519 | 7.94 | -- | -- | -2.13 | -- | -- | 0.294 | -- | 19.93 | 314 | -- | -- |
| 242.56 | 0.727 | 8.01 | -- | -- | -- | -- | -- | -0.00669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 2 | 64.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 3 | 64.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 13 | 66.64 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 25 | 67.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 37 | 68.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 69.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 42 | 69.09 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 44 | 69.10 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 56 | 69.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 84 | 70.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 100 | 71.09 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 116 | 71.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 127 | 71.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 153 | 72.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 186 | 73.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 231 | 74.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 262 | 74.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 310 | 75.35 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 438 | 77.11 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 655 | 79.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 676 | 79.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 692 | 79.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 893 | 81.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 945 | 81.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 13 |