Os01g0923300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os01g0923300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.45 | 0.207 | 12.2 | -1.37 | 0.611 | -0.663 | 0.666 | -0.698 | -0.153 | 3.2 | 24.3 | 26 | -- | -- |
| 20.11 | 0.21 | 12.3 | -1.47 | 0.605 | -0.586 | 0.441 | -- | -0.174 | 3.23 | 24.45 | 25 | -- | -- |
| 20.58 | 0.211 | 12.3 | -1.43 | 0.601 | -0.668 | -- | -0.383 | -0.156 | 3.17 | 23.53 | 25 | -- | -- |
| 20.71 | 0.212 | 12.3 | -1.48 | 0.607 | -0.596 | -- | -- | -0.177 | 3.2 | 24.43 | 25 | -- | -- |
| 39.41 | 0.292 | 12.2 | -1.4 | -- | -0.446 | -- | -0.0612 | -0.092 | -- | 20.75 | 25 | -- | -- |
| 25.14 | 0.235 | 12.2 | -1.33 | 0.517 | -- | 0.475 | -- | -0.0705 | 3.64 | -- | -- | -- | -- |
| 25.82 | 0.238 | 12.2 | -1.34 | 0.519 | -- | -- | -- | -0.0732 | 3.59 | -- | -- | -- | -- |
| 39.4 | 0.292 | 12.2 | -1.39 | -- | -0.424 | -- | -- | -0.0906 | -- | 20.7 | 24 | -- | -- |
| 40.62 | 0.297 | 12.2 | -- | 0.523 | 0.939 | -- | -- | 0.306 | 3.53 | 22.4 | 47520 | -- | -- |
| 40.8 | 0.298 | 12.2 | -1.32 | -- | -- | -- | -- | -0.0594 | -- | -- | -- | -- | -- |
| 73.11 | 0.4 | 12.2 | -- | 0.492 | -- | -- | -- | 0.076 | 3.61 | -- | -- | -- | -- |
| 55.98 | 0.348 | 12.2 | -- | -- | 0.913 | -- | -- | 0.308 | -- | 22.2 | 47520 | -- | -- |
| 86.61 | 0.434 | 12.2 | -- | -- | -- | -- | -- | 0.0868 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 5 | 18.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 30 | 19.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 49 | 19.28 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 132 | 19.45 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 195 | 19.56 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 203 | 19.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 204 | 19.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 208 | 19.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 216 | 19.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 221 | 19.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 222 | 19.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 223 | 19.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 258 | 19.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 280 | 19.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 338 | 19.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 430 | 19.89 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 610 | 20.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 654 | 20.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 707 | 20.31 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 10 |
| 771 | 20.40 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 20 |
| 864 | 20.50 | temperature | 20 | 90 | > th | dose independent | rect. | 10 | 19 |
| 918 | 20.54 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 6 |
| 919 | 20.54 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 931 | 20.55 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |