BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0923300 Os01g0923300|AK067520
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0923300 CBS domain containing protein 354 3e-98
Os12g0169400 CBS domain containing protein 258 3e-69
Os01g0961200 CBS domain containing protein 233 1e-61
Os11g0170300 Hypothetical protein 69 2e-12
>Os01g0923300 CBS domain containing protein
Length = 238
Score = 354 bits (908), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/212 (83%), Positives = 177/212 (83%)
Query: 27 PTENGHHDXXXXXXXXXXXXXXXXXXQQSMTGERTVKRLRLSKALTIPDHTTVYEACRRM 86
PTENGHHD QQSMTGERTVKRLRLSKALTIPDHTTVYEACRRM
Sbjct: 27 PTENGHHDAAAAAAGRRSSASISRASQQSMTGERTVKRLRLSKALTIPDHTTVYEACRRM 86
Query: 87 AARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLAV 146
AARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLAV
Sbjct: 87 AARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLAV 146
Query: 147 EALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXHW 206
EALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER HW
Sbjct: 147 EALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW 206
Query: 207 GASVSGPNTFIETLRERMFRPSLSTIISENSK 238
GASVSGPNTFIETLRERMFRPSLSTIISENSK
Sbjct: 207 GASVSGPNTFIETLRERMFRPSLSTIISENSK 238
>Os12g0169400 CBS domain containing protein
Length = 542
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 122/183 (66%), Positives = 147/183 (80%)
Query: 56 MTGERTVKRLRLSKALTIPDHTTVYEACRRMAARRVDAVLLTDSNALLCGILTDKDITTR 115
+TGERTV++LRLSKALTIP+ TTV EACRRMAARRVDAVLLTD+ LL GI+TDKD+ TR
Sbjct: 50 LTGERTVRKLRLSKALTIPEGTTVSEACRRMAARRVDAVLLTDAQGLLSGIVTDKDVATR 109
Query: 116 VIARELKLEETPVSKVMTRNPLFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIA 175
V+A L++E+T +SK+MTRNP + +SDTLA+EALQKMVQGKFRHLPVVENGEVIA+LDIA
Sbjct: 110 VVAEGLRVEQTIMSKIMTRNPTYAMSDTLAIEALQKMVQGKFRHLPVVENGEVIAMLDIA 169
Query: 176 KCLYDAIARMERXXXXXXXXXXXXXXXXXHWGASVSGPNTFIETLRERMFRPSLSTIISE 235
KCLYDAI+R+E+ G + S P FIETLRERMF+PSLSTI++E
Sbjct: 170 KCLYDAISRLEKAAEQGSAIAAAVEGVERQLGGNFSAPYAFIETLRERMFKPSLSTIVTE 229
Query: 236 NSK 238
+K
Sbjct: 230 GTK 232
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 79 VYEACRRMAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLF 138
VY A ++M RV++V++ N L GI T KD+ RV+A+ L E T V KVMT NP F
Sbjct: 242 VYVATQKMREFRVNSVVVATGNTLQ-GIFTSKDLLMRVVAQNLSPELTLVEKVMTVNPDF 300
Query: 139 VLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME 186
DT ++AL M GKF H+PV++ G++ A LD+ + + AI +E
Sbjct: 301 ATLDTTILDALHIMHDGKFLHIPVLDREGQIAACLDVLQLTHAAIQLVE 349
>Os01g0961200 CBS domain containing protein
Length = 533
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 143/184 (77%)
Query: 54 QSMTGERTVKRLRLSKALTIPDHTTVYEACRRMAARRVDAVLLTDSNALLCGILTDKDIT 113
Q+ + ERTVK+LRL+KALT+P+ T+V EACRRMA +RVDA LLTDSN +L GILT +DI+
Sbjct: 46 QAPSPERTVKKLRLAKALTLPEATSVSEACRRMALKRVDAALLTDSNGMLSGILTAEDIS 105
Query: 114 TRVIARELKLEETPVSKVMTRNPLFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLD 173
RVIA L+ +ET V+K MTRNP+FV+S++ A+EALQKMV+GKFRHLPVVE+GEVIA+LD
Sbjct: 106 GRVIAEGLRPDETNVAKAMTRNPVFVMSNSPAIEALQKMVKGKFRHLPVVEHGEVIAMLD 165
Query: 174 IAKCLYDAIARMERXXXXXXXXXXXXXXXXXHWGASVSGPNTFIETLRERMFRPSLSTII 233
I K LYDAI+RME+ WG GP++FIE LR+++F+PSLSTII
Sbjct: 166 ITKFLYDAISRMEKAAEQGSAIAAAMEGVERQWGNDFPGPHSFIENLRDQLFKPSLSTII 225
Query: 234 SENS 237
+EN+
Sbjct: 226 TENN 229
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 79 VYEACRRMAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLF 138
V A ++M RV++V++ N LL GILT KD+ R++A+ L + T V KVMT NP
Sbjct: 240 VIAAAKKMREYRVNSVVVMTGNMLL-GILTSKDLVLRLVAQSLSPDVTLVEKVMTTNPDC 298
Query: 139 VLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME 186
DT +EAL M GK+ H+PV + NG++IA LD + + AI+ +E
Sbjct: 299 ATLDTSILEALHSMQDGKYLHIPVADKNGQIIACLDALQLTHAAISMVE 347
>Os11g0170300 Hypothetical protein
Length = 97
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 153 VQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 187
V GKFRHLPVVENGEVIA+LDIAKCLYDAI+R+E+
Sbjct: 4 VLGKFRHLPVVENGEVIAMLDIAKCLYDAISRLEK 38
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,044,429
Number of extensions: 147377
Number of successful extensions: 299
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 6
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)