BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0948500 Os01g0948500|AK119342
(672 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0948500 Armadillo-like helical domain containing protein 1139 0.0
Os12g0277400 U box domain containing protein 153 3e-37
Os12g0277000 U box domain containing protein 150 2e-36
Os03g0657100 U box domain containing protein 137 2e-32
Os06g0275700 U box domain containing protein 103 3e-22
Os02g0727300 U box domain containing protein 97 5e-20
>Os01g0948500 Armadillo-like helical domain containing protein
Length = 672
Score = 1139 bits (2945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/672 (86%), Positives = 578/672 (86%)
Query: 1 MPRTAAGVDVEDLLVRVKNGXXXXXXXXXXXXXXXXXQGRLGEDDDEDXXXXXXXXXXXX 60
MPRTAAGVDVEDLLVRVKNG QGRLGEDDDED
Sbjct: 1 MPRTAAGVDVEDLLVRVKNGADAELAEVAREVAALAEQGRLGEDDDEDGVLVPALLARLA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXCVGCESKERLASIEALSSIVRSLSRDVDETREAIALLLDL 120
CVGCESKERLASIEALSSIVRSLSRDVDETREAIALLLDL
Sbjct: 61 AAGGAEARVRVMAALRRLARCVGCESKERLASIEALSSIVRSLSRDVDETREAIALLLDL 120
Query: 121 SDIPQVRQRIGRIKGSIVMLVTLRNAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRP 180
SDIPQVRQRIGRIKGSIVMLVTLRNAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRP
Sbjct: 121 SDIPQVRQRIGRIKGSIVMLVTLRNAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRP 180
Query: 181 LIHYLKEGSDMNKILMATAISKMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHXXXXX 240
LIHYLKEGSDMNKILMATAISKMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKH
Sbjct: 181 LIHYLKEGSDMNKILMATAISKMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHSALGA 240
Query: 241 XXXXXXXXQNAEILINSGITGPLLQLLFSVTSVLMTLREPASAILAAIAQSERILLHKDV 300
QNAEILINSGITGPLLQLLFSVTSVLMTLREPASAILAAIAQSERILLHKDV
Sbjct: 241 LLNLSSSLQNAEILINSGITGPLLQLLFSVTSVLMTLREPASAILAAIAQSERILLHKDV 300
Query: 301 APQMLSLLNLSSPVIQLHLLRALNSISGHTNAKRARAKIRQNGGVQLLLPFLTEKNIDIK 360
APQMLSLLNLSSPVIQLHLLRALNSISGHTNAKRARAKIRQNGGVQLLLPFLTEKNIDIK
Sbjct: 301 APQMLSLLNLSSPVIQLHLLRALNSISGHTNAKRARAKIRQNGGVQLLLPFLTEKNIDIK 360
Query: 361 IAALNFISNLSKDASQELAEQIRDTHLNIFVKIISSPTSGNEKAAAIGILSNLPVTDKKI 420
IAALNFISNLSKDASQELAEQIRDTHLNIFVKIISSPTSGNEKAAAIGILSNLPVTDKKI
Sbjct: 361 IAALNFISNLSKDASQELAEQIRDTHLNIFVKIISSPTSGNEKAAAIGILSNLPVTDKKI 420
Query: 421 XXXXXXXXXXXXXXXXXEINITAPLTPLRTSLLEGIAGVLIRFTVPWDKKLQSLAVGHGV 480
EINITAPLTPLRTSLLEGIAGVLIRFTVPWDKKLQSLAVGHGV
Sbjct: 421 TELLTEANLLPLLISLLEINITAPLTPLRTSLLEGIAGVLIRFTVPWDKKLQSLAVGHGV 480
Query: 481 VPCLVKLLSEGSIKAKSKXXXXXXXXXXXXXXXRKTKLPRWLCVAPSAETYCLVHNSQCT 540
VPCLVKLLSEGSIKAKSK RKTKLPRWLCVAPSAETYCLVHNSQCT
Sbjct: 481 VPCLVKLLSEGSIKAKSKAATSLAQLSQNSLALRKTKLPRWLCVAPSAETYCLVHNSQCT 540
Query: 541 VKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEIWENGSKVIEKASGVHAL 600
VKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEIWENGSKVIEKASGVHAL
Sbjct: 541 VKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEIWENGSKVIEKASGVHAL 600
Query: 601 LRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPILKPMIGKILA 660
LRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPILKPMIGKILA
Sbjct: 601 LRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPILKPMIGKILA 660
Query: 661 HLELLQTQSSYF 672
HLELLQTQSSYF
Sbjct: 661 HLELLQTQSSYF 672
>Os12g0277400 U box domain containing protein
Length = 806
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 166/632 (26%), Positives = 297/632 (46%), Gaps = 50/632 (7%)
Query: 85 ESKERLASIEALSSIVRSLSRDVDETRE-AIALLLDLSDIPQVRQRIGRIKGSIVMLVTL 143
++K +A+ + + +IV+ L+ + +E A++LL +LS+ + ++IG + G+I++LV L
Sbjct: 175 DNKNEIAAGDNIRTIVKFLNHGHSQEKEQAVSLLYELSEYKPLSEKIGSVSGAILILVGL 234
Query: 144 RNAHEPG--THDDAEKLLHMLSSNPQNVLLMAEAGYFRPLIHYLKEGSDMNKILMATAIS 201
++ T D AEK L L S +NV MAE G +PL+ L EGS ++ MA +
Sbjct: 235 SSSKVENLLTVDRAEKTLENLESCEKNVRQMAENGRLQPLLRLLLEGSSDTQLSMAAHLG 294
Query: 202 KMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHXXXXXXXXXXXXXQNAEILINSGITG 261
++ LS +K + + A LV + KSGN EA+ +A+ILI +GI
Sbjct: 295 ELVLSNDVKVLVAQT-AGSTLVNIMKSGNREAREAALKALNQISSYDTSAKILIEAGILP 353
Query: 262 PLLQLLFSVTS--VLMTLREPASAILAAIAQS------------ERILLHKDVAPQMLSL 307
PL+ LF+V S + M L+E ++ ILA I S + L+ +++ +L L
Sbjct: 354 PLITDLFTVGSNQLPMRLKEVSATILANIVASGASFESVPLDHNRQNLVSEEIVHNLLHL 413
Query: 308 LNLSSPVIQLHLLRALNSI-SGHTNAKRARAKIRQNGGVQLLLPFLTEKNIDIKIAALNF 366
++ + P I+ LL+ L + + T + I+ +G L+ F+ ++++A++
Sbjct: 414 ISNTGPAIECKLLQVLVGLTTSATTVQSIVDAIKSSGATVSLIQFVEAPQREVRLASIKL 473
Query: 367 ISNLSKDASQELAEQIRD--THLNIFVKIISSPTS-GNEKAAAIGILSNLPVTDKKIXXX 423
++N+S QELAE R + L+ V++I+ E+AAA G++++LP D +
Sbjct: 474 LNNISPFMGQELAEAFRGNFSQLSSLVRVIADNNGISEEQAAAAGLIADLPPRDSVLTRR 533
Query: 424 XXXXXXXXXXXXXXEINITAPLTPLR--TSLLEGIAGVLIRFTVPWDK-KLQSLAVGHGV 480
+ + R LEG+ V+ R T D + +A + +
Sbjct: 534 LLQDGAFSTIITKVTMVRQGDIRGGRFVNPFLEGLVRVVSRITFILDDLDIIDVARDYNL 593
Query: 481 VPCLVKLLSEGSIKAKSKXXXXXXXXXXXXXXXRKTKLPRWLCVAPS------------- 527
P LL + R++KL + AP+
Sbjct: 594 TPLFTDLLQMNGLDT-----VQIVSATALENLSRQSKLLTRIVPAPNPGFCFSIFPCLSQ 648
Query: 528 ---AETYCLVHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEI- 583
A C VH C+ + +FCL++ AV L+ L+ +N + A L AL+TL++D +
Sbjct: 649 KSVATGACRVHVGICSARESFCLLEGKAVEKLVACLDHNNEKVVEAALAALSTLLEDGVD 708
Query: 584 WENGSKVIEKASGVHALLRI-AEAGNSTSQEKAIWMLERIFRLE--AHRERYGEIAQALL 640
E G V+ A GV+ +L + E N +++A+W +ERI R++ A+ + L
Sbjct: 709 IEQGVMVLCDAEGVNPILEVLCENRNEALRQRAVWAVERILRIDEIAYEISGNQNVGTAL 768
Query: 641 IDLAQKGDPILKPMIGKILAHLELLQTQSSYF 672
++ + GD + + + L H++ L S F
Sbjct: 769 VEAFRHGDSRTRQIAERALKHVDKLPNFSGIF 800
>Os12g0277000 U box domain containing protein
Length = 843
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 287/628 (45%), Gaps = 49/628 (7%)
Query: 85 ESKERLASIEALSSIVRSLS-RDVDETREAIALLLDLSDIPQVRQRIGRIKGSIVML--V 141
E ++ ++ + + IV+ + D E A++LL +LS V ++I + G+I++L V
Sbjct: 197 EYRDSVSEGDTIRRIVKFIDFEDCQERELAVSLLCELSKSEMVCEKISELNGAILILGKV 256
Query: 142 TLRNAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRPLIHYLKEGSDMNKILMATAIS 201
+ P ++AE L L +NVL MAE G PL++ L EGS ++ +A+++
Sbjct: 257 ACSKSQNPALAEEAEMTLENLEKCEKNVLQMAENGRLEPLLNLLIEGSPEKQLRIASSLE 316
Query: 202 KMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHXXXXXXXXXXXXXQNAEILINSGITG 261
K+ LS +K+ + + + + ++G L AK ++A++LI GI
Sbjct: 317 KIVLSNDLKNLVAQRVGL-LFAGVVENGTLPAKEVAFKVLDHISTNTESAKVLIEDGILL 375
Query: 262 PLLQLLFSVTSVLM---TLREPASAILAAIA-----------QSERILLHKDVAPQMLSL 307
PL ++L SV V L+E A+A+L+ + R ++ +D+ +L L
Sbjct: 376 PLFRVL-SVDGVKFLPPRLQEAAAAVLSNLVACGIDFGTVPLDGNRTIVSEDIVHSLLHL 434
Query: 308 LNLSSPVIQLHLLRALNSISGHTNAKRA-RAKIRQNGGVQLLLPFLTEKNIDIKIAALNF 366
++ +SP IQ LL +S T + + IR +G + L+ F+ + + + A++
Sbjct: 435 ISNTSPPIQCKLLEIFVMLSSSTTTVLSIISAIRSSGAITNLVQFVESDHQESRAASIKL 494
Query: 367 ISNLSKDASQELAEQIRD--THLNIFVKIIS-SPTSGNEKAAAIGILSNLPVTDKKIXXX 423
+ +S D E+A+ +R T L V+I+S + + +E+ AA+ IL+NLP D+++
Sbjct: 495 LCKISFDMDHEIAQVLRSSPTLLGCLVRIVSENDANADEQDAALQILANLPKRDRRLTME 554
Query: 424 XXXXXXXXXXXXXXEINITAPLTP---LRTSLLEGIAGVLIRFT--VPWDKKLQSLAVGH 478
+NI T + ++LEG+ VL R T + + + +LA +
Sbjct: 555 LMEQGAFKYIARKV-LNICRRGTANNIVDNTMLEGLVKVLARITYILREEPRCVALAREY 613
Query: 479 GVVPCL-----------VKLLSEGSIKAKSKXXXXXXXXXXXXXXXRKTKLPRWLCVAPS 527
+ V+LLS ++ S +K+ L W P
Sbjct: 614 NLASLFTSLLRLNGLDGVQLLSAKALVNLSVESRYMTGTPNFDEHEQKSGLT-WFGKKPP 672
Query: 528 AETYCLVHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQD--EIWE 585
C VH+ C+++ FC+++ AV L+ L N++ A L AL TL+ D EI E
Sbjct: 673 GIQLCRVHSGICSIRDNFCILEGKAVERLVVCLSHQNKKVVEASLAALCTLLGDGVEITE 732
Query: 586 NGSKVIEKASGVHALLRIAEAGNSTS--QEKAIWMLERIFRLE--AHRERYGEIAQALLI 641
G V+ A+ V + I + GN T Q++ W +ERI R E A + L+
Sbjct: 733 -GVSVLYMANAVEPIFEILK-GNPTGTLQQRVTWAVERILRAENIAKAASSDRGLSSALV 790
Query: 642 DLAQKGDPILKPMIGKILAHLELLQTQS 669
Q GD + + L H+ L T S
Sbjct: 791 HAFQNGDSRTRRIAEASLKHINKLPTFS 818
>Os03g0657100 U box domain containing protein
Length = 824
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 169/658 (25%), Positives = 279/658 (42%), Gaps = 84/658 (12%)
Query: 85 ESKERLASIEALSSIVRSLSRDVDETRE-AIALLLDLSDIPQVRQRIGRIKGSIVMLVTL 143
++KE L + + +I++ LS + + RE A++LL +LS +RIG + G+I++LV +
Sbjct: 176 DNKEELGKGDTIRTIIKFLSNEHVQERELAVSLLHELSGHEPTCERIGAVYGAILLLVGM 235
Query: 144 RNAHEPGTH--DDAEKLLHMLSSNPQNVLLMAEAGYFRPLIHYLKEGSDMNKILMATAIS 201
++ D AE L L NV MA+ G +PL+ L G ++ MA +
Sbjct: 236 GSSKSESAVAVDKAESTLRNLDRFDANVKQMADNGRLQPLLTRLLRGEPDTRVAMADYLG 295
Query: 202 KMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHXXXXXXXXXXXXXQNAEILIN-SGIT 260
++ L+ K+++ E A LV M ++G AK +A++L+ +G+
Sbjct: 296 ELALANDDKAAVAEQ-AGPLLVGMLRTGATPAKEATLKALREISSSEASAKLLLQRAGVL 354
Query: 261 GPLLQ-LLFSVTSVLMTLREPASAILAAIAQS------------------------ERIL 295
PL+ +LFS + M L+E A+ ILA + S R L
Sbjct: 355 PPLVNDVLFSTGHLPMKLKELAATILANLVASGADFRSIPLDDDEDDDGGGGGRGRRRTL 414
Query: 296 LHKDVAPQMLSLLNLSSPVIQLHLLRALNSISGHTNAKRARAKIRQNGGVQL-LLPFLTE 354
L +DV L L++ + P I LL L ++ ++ G + L+ F+
Sbjct: 415 LSEDVVHSQLHLISNTGPAIGCRLLSVLAGLTSSRATVADVVAAVKSSGATISLIQFIEA 474
Query: 355 KNIDIKIAALNFISNLSKDASQELAEQIRDTHLNIFVKIISSPTSG--NEKAAAIGILSN 412
+ DI++ +L + NL+ ELA+ + + L+ ++ ISS G E+AAA+G+L +
Sbjct: 475 AHRDIRVESLKLLRNLAPYMGAELADALGGS-LSSLLRAISSDGGGVTEEQAAAVGLLGD 533
Query: 413 LPVTDKKIXXXXXXXXXXXXXXXXXEINITAP-LTPLR-----------TSLLEGIAGVL 460
LP D + AP L LR T L EG+ V+
Sbjct: 534 LPEGDSSLTRQLFDLGA---------FRALAPKLAELRRGTIRGGNRYVTPLTEGVVKVM 584
Query: 461 IRFTVPW--DKKLQSLAVGHGVVPCLVKLLSEG--------SIKAKSKXXXXXXXXXXXX 510
R T D + A G+ P V+LL S A K
Sbjct: 585 YRVTCALEEDAEYVEFAREAGLAPLFVELLHTNGMDTVQLYSAMALEKLSLQSSHLTAIP 644
Query: 511 XXXRKTKLPRWLCVA------PSAETYCLVHNSQCTVKSTFCLVKAG---AVSPLIQILE 561
C+ C VH C+++ TFCL +A AV L+ L+
Sbjct: 645 APPSPPAGFGCACLGRRPAAAAVPAGVCRVHGGFCSLRETFCLAQADGGKAVERLVACLD 704
Query: 562 DDNREADGAVLEALATLMQDEI-WENGSKVIEKASGVHALLRI-AEAGNSTSQEKAIWML 619
+ A L AL+TL+ D + G V+ +A G+ ++ I E+ Q +A+W +
Sbjct: 705 HLDGRVVEAALAALSTLVCDGVDAREGVVVLGEADGLRPVVDIMVESRTEALQRRAVWAV 764
Query: 620 ERIFRLEAHRERYGEIA-----QALLIDLAQKGDPILKPMIGKILAHLELLQTQSSYF 672
ERI R+E E GE+A + L++ + GDP + + L HL+ + S+ F
Sbjct: 765 ERILRVE---EIAGEVAADQTVASALVEAYRNGDPRTRQTAERALRHLDRIPNFSAAF 819
>Os06g0275700 U box domain containing protein
Length = 973
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 154/652 (23%), Positives = 272/652 (41%), Gaps = 67/652 (10%)
Query: 87 KERLASIEALSSIVRSLSRDV-DETREAIALLLDLSDIPQVRQRIGRIKGSIVMLVTLR- 144
KE +A+ A++ ++ LS + DE AI+ LL+LS + + IG GSI+ML T++
Sbjct: 318 KEVIANTRAITRTIKLLSSNSPDERHAAISFLLELSKSELLLENIGSTSGSILMLTTMKF 377
Query: 145 -NAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRPLIHYLKEGSDMNKILMATAISKM 203
++ +P + A ++L L + P+N+ MAE+GY PL +L EGS+ ++ M + + ++
Sbjct: 378 NDSDDPVAAEKAGEVLKNLENCPKNIKYMAESGYLDPLQRHLVEGSEDVQMEMVSYLGEL 437
Query: 204 FLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHXXXXXXXXXXXXXQNAEILINSGITGPL 263
+ M ++ A E L++M SGN + N++ L+++G +
Sbjct: 438 VQKQEMTINIA-GSASEILIKMVHSGNTVIRKAALDVLVQISSDGPNSKTLVDAGAVPVM 496
Query: 264 LQLLF--SVTSVLMTLREPASAILAAIAQS----ERILLHKD--VAPQMLSLLNLSSPV- 314
++ LF + M + A+A+LA I +S + I+++K+ V S+ N + +
Sbjct: 497 VEELFIRKIDDEPMGSKTEAAAVLANIVESGLDPDTIVVNKEGHVITSKYSVYNFTHMLK 556
Query: 315 ------IQLHLLRALNSISGHTNAKRARAKIRQNGGVQL-LLPFLTEKNIDIKIAALNFI 367
+ L ++R L +++ + + L ++ F+ K + I+A +
Sbjct: 557 CSMPDDLNLSIIRVLLALTALPKPLMTVVSVMKEQDSSLTVIEFMGSKTEALGISATRLL 616
Query: 368 SNLSKDASQELAEQIRDT--HLNIFVKIISSPTSGNEK-AAAIGILSNLPVTDKKIXXXX 424
LS +AE++ VK I P E+ A A +L+ LP + +
Sbjct: 617 IALSPQMGHTIAEKLCKAPGQPGRLVKSIGQPGRVTERHAVAATLLARLPYQNITLNLAL 676
Query: 425 XXXXXXXXXXXXXEINITAPLTPLR--TSLLEGIAGVLIRFTVP-WDKKLQSLAVGHGVV 481
E + R + +EG+ G L+R T+ +D + A+ H
Sbjct: 677 LEQGAVPTLLAKIEEMQRGEMRVSRHAKTYMEGLVGALVRMTMTLYDPDVLLAAMDHNFT 736
Query: 482 PCLVKLL--SEGSIKAK-----------SKXXXXXXXXXXXXXXXRKTKLPRWLCVA--- 525
L LL S GS + + + +K + R L A
Sbjct: 737 AVLTDLLVRSAGSDEVQRLAAVGLENLSHQSVNLSQPPSEEQRRPKKKNILRRLRDAHTG 796
Query: 526 ------------PSAETYCLVHNSQCTVKSTFCLVKAGAVSPLIQILE-DDNREADGAVL 572
P+ C VH C+ +TFCL +AGAV L+ +LE ++N AVL
Sbjct: 797 RVHDNNRKPPPPPAQGRLCPVHRGVCSPATTFCLAEAGAVEALVGVLESNENGRVVDAVL 856
Query: 573 EALATLMQDEI-WENGSKVIEKASGVHALLRI----AEAGNSTS---QEKAIWMLERIFR 624
AL TLM D + E G V+ + +LR + G T+ + W +ER
Sbjct: 857 GALCTLMDDAVDVERGVAVLAEHDAARHVLRALRQHRDVGGDTAGAVSRRCFWAVERFLA 916
Query: 625 LEAHRERYGEIAQ----ALLIDLAQKGDPILKPMIGKILAHLELLQTQSSYF 672
R A + L+ KGD K + +L L + S+ +
Sbjct: 917 HGGERCVRDVTADRALPSALVSAFHKGDAATKQVAESVLRSLHRMPDYSATY 968
>Os02g0727300 U box domain containing protein
Length = 973
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 130/555 (23%), Positives = 234/555 (42%), Gaps = 60/555 (10%)
Query: 85 ESKERLASIEALSSIVRSLSRD-VDETREAIALLLDLSDIPQVRQRIGRIKGSIVMLVTL 143
E K+ + +A++ ++ LS + DE AI+ LL+LS + + IG GSI++L T+
Sbjct: 323 EGKDIIGKTKAIARTIKLLSTNGTDERHAAISFLLELSKSQLLLEDIGSTAGSILILTTM 382
Query: 144 R--NAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRPLIHYLKEGSDMNKILMATAIS 201
R ++ +P A ++L L +N+ MAE+GY PL +L EGS+ ++ M ++
Sbjct: 383 RINDSDDPIAAQKAGEVLKNLEKCSKNIKYMAESGYLEPLQSHLVEGSEEMQMEMVGYLA 442
Query: 202 KMFLSEPMKSSL-GEDGAVEPLVEMFKSGNLEAKHXXXXXXXXXXXXXQNAEILINSGIT 260
++ + + + G V L++M S N A+ N++ L+ +G+
Sbjct: 443 ELIQEQELTIDINGSTSGV--LIKMVHSCNTVARKAALDVLVQLSSHRPNSKTLVEAGVV 500
Query: 261 GPLLQLLF--SVTSVLMTLREPASAILAAIAQS------------ERILLHKDVAPQMLS 306
+++ LF V ++ + A+A+LA + +S +L K +
Sbjct: 501 PVMVEELFIRKVDDEPLSYKAMAAAVLANVVESGIDPDNTVVNKEGHVLTSKYSIYNFVH 560
Query: 307 LLNLSSP-VIQLHLLRALNSISGHTNAKRARAK-IRQNGGVQLLLPFLTEKNIDIKIAAL 364
+L P + L ++R L +++ H A A +R+N ++ ++ + +A+
Sbjct: 561 MLKCFMPDELNLSIIRVLLALTAHAKALAAVVSVVRENHRGHSIVELMSSWTEALGVAST 620
Query: 365 NFISNLSKDASQELAEQIRDTH-------LNIFVKIISSPTSGNEKAAAIGILSNLPVTD 417
+ LS +AE++ T +IF ++ T AAA+ +LS LP +
Sbjct: 621 RLLITLSAHMGHTIAERLCKTQGQPRRLVRSIFRAGRAAIT--ERHAAAVTLLSRLPYRN 678
Query: 418 KKIXXXXXXXXXXXXXXXXXEI--NITAPLTPLRTS--LLEGIAGVLIRFTVP-WDKKLQ 472
+ E + A +T R + +EG+ G L+R T ++ +
Sbjct: 679 VSLNLALVQEGAVPAILRGIEEMGSGAARMTTSRHAAPYMEGLVGTLVRLTATLYNPDVL 738
Query: 473 SLAVGHGVVPCLVKL--------------------LSEGSIK-AKSKXXXXXXXXXXXXX 511
A+ H L L LS SIK ++
Sbjct: 739 KAAMDHDFASVLTALLAGAAGSGEVQRLAAVGLENLSYHSIKLSRPPPPPEDEPRPKKMT 798
Query: 512 XXRKTKLPRWLCVAPSAE---TYCLVHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREAD 568
++ K R + S C VH CT +TFCL++AGAV L+ LE+D+
Sbjct: 799 ILKRLKDARVHNHSSSKNPPLNVCPVHRGVCTPATTFCLLEAGAVEGLLACLENDDARVV 858
Query: 569 GAVLEALATLMQDEI 583
A L AL TL+ D +
Sbjct: 859 DAALGALCTLVDDRV 873
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,090,467
Number of extensions: 575436
Number of successful extensions: 1541
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1542
Number of HSP's successfully gapped: 7
Length of query: 672
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 565
Effective length of database: 11,448,903
Effective search space: 6468630195
Effective search space used: 6468630195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)