Os06g0275700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os06g0275700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.44 | 0.38 | 10.7 | -0.322 | 1.46 | 0.944 | 0.855 | 0.808 | 0.275 | 1.24 | 21.7 | 1021 | -- | -- |
| 66.88 | 0.381 | 10.7 | -0.489 | 1.48 | 0.868 | 1.03 | -- | 0.232 | 1.31 | 22 | 951 | -- | -- |
| 68.03 | 0.384 | 10.7 | -0.298 | 1.46 | 0.943 | -- | 1 | 0.281 | 1.29 | 21.71 | 963 | -- | -- |
| 70.99 | 0.392 | 10.7 | -0.536 | 1.47 | 0.868 | -- | -- | 0.23 | 1.29 | 22 | 960 | -- | -- |
| 193.62 | 0.648 | 10.7 | -0.305 | -- | 1.26 | -- | 1.09 | 0.227 | -- | 21.9 | 936 | -- | -- |
| 96.38 | 0.46 | 10.6 | -0.194 | 1.59 | -- | 0.975 | -- | 0.5 | 1.08 | -- | -- | -- | -- |
| 100.33 | 0.469 | 10.6 | -0.229 | 1.59 | -- | -- | -- | 0.494 | 1.11 | -- | -- | -- | -- |
| 185.29 | 0.634 | 10.7 | -0.603 | -- | 1.33 | -- | -- | 0.0619 | -- | 24.74 | 962 | -- | -- |
| 77.81 | 0.411 | 10.7 | -- | 1.47 | 0.749 | -- | -- | 0.286 | 1.29 | 22 | 903 | -- | -- |
| 256.9 | 0.749 | 10.6 | -0.168 | -- | -- | -- | -- | 0.526 | -- | -- | -- | -- | -- |
| 101.71 | 0.472 | 10.6 | -- | 1.58 | -- | -- | -- | 0.52 | 1.1 | -- | -- | -- | -- |
| 194.35 | 0.649 | 10.7 | -- | -- | 1.22 | -- | -- | 0.138 | -- | 24.7 | 963 | -- | -- |
| 257.65 | 0.749 | 10.6 | -- | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 16 | 63.80 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 19 | 64.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 23 | 64.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 39 | 64.81 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 40 | 64.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 42 | 64.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 43 | 64.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 60 | 65.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 64 | 65.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 287 | 66.91 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 16 |
| 367 | 67.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 413 | 67.60 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 419 | 67.63 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 7 |
| 489 | 68.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 507 | 68.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 547 | 68.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 553 | 68.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 577 | 68.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 597 | 68.60 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 5 |