Os12g0277000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os12g0277000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.02 | 0.835 | 6.12 | -0.489 | 0.976 | 2.2 | -0.622 | 2.1 | 0.0961 | 22.5 | 20.3 | 698 | -- | -- |
| 325.3 | 0.84 | 6.19 | -0.774 | 1.02 | 1.98 | 0.405 | -- | -0.00632 | 21.8 | 20.7 | 795 | -- | -- |
| 317.21 | 0.83 | 6.11 | -0.46 | 0.99 | 2.14 | -- | 2.01 | 0.102 | 22.3 | 20.41 | 705 | -- | -- |
| 324.61 | 0.839 | 6.18 | -0.849 | 0.983 | 1.91 | -- | -- | -0.0218 | 22.2 | 20.7 | 750 | -- | -- |
| 369.79 | 0.896 | 6.11 | -0.502 | -- | 2.33 | -- | 1.97 | 0.0243 | -- | 20.8 | 795 | -- | -- |
| 433.52 | 0.976 | 6.08 | -0.124 | 1.29 | -- | 0.114 | -- | 0.436 | 22.1 | -- | -- | -- | -- |
| 433.56 | 0.975 | 6.08 | -0.128 | 1.29 | -- | -- | -- | 0.435 | 22.1 | -- | -- | -- | -- |
| 380 | 0.908 | 6.17 | -0.948 | -- | 2.2 | -- | -- | -0.0971 | -- | 20.82 | 795 | -- | -- |
| 341.45 | 0.861 | 6.17 | -- | 1.03 | 1.72 | -- | -- | 0.0988 | 22.1 | 20.6 | 744 | -- | -- |
| 534.39 | 1.08 | 6.05 | -0.111 | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
| 434 | 0.975 | 6.08 | -- | 1.29 | -- | -- | -- | 0.449 | 22.1 | -- | -- | -- | -- |
| 401.1 | 0.933 | 6.13 | -- | -- | 1.93 | -- | -- | 0.0624 | -- | 20.83 | 769 | -- | -- |
| 534.71 | 1.08 | 6.05 | -- | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.05 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 2 | 306.11 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 4 | 306.55 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 9 | 308.14 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 11 | 308.40 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 32 | 311.30 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 43 | 312.35 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 21 |
| 48 | 313.07 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 12 |
| 54 | 313.34 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 56 | 313.38 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 75 | 314.35 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 118 | 315.91 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 162 | 317.31 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 208 | 318.83 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 22 |
| 220 | 319.10 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 226 | 319.26 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 20 |
| 239 | 319.66 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 257 | 320.10 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 275 | 320.49 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 324 | 321.61 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 327 | 321.75 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 339 | 322.28 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 358 | 323.03 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 365 | 323.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 386 | 323.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 402 | 324.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 467 | 327.17 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 20 |
| 473 | 327.64 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 549 | 330.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 724 | 335.69 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |