Os01g0948500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os01g0948500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.63 | 0.363 | 11.2 | -1.04 | 0.462 | -0.474 | 0.745 | 0.634 | -0.192 | 17.9 | 19.35 | 68 | -- | -- |
| 59.95 | 0.361 | 11.2 | -1.01 | 0.439 | -0.66 | 0.697 | -- | -0.18 | 18 | 19.19 | 142 | -- | -- |
| 60.5 | 0.365 | 11.2 | -1.02 | 0.475 | -0.491 | -- | 0.49 | -0.183 | 17.7 | 19.35 | 68 | -- | -- |
| 60.97 | 0.364 | 11.2 | -1 | 0.454 | -0.647 | -- | -- | -0.175 | 17.6 | 19.1 | 142 | -- | -- |
| 72.05 | 0.395 | 11.2 | -1.03 | -- | -0.562 | -- | 0.455 | -0.205 | -- | 19.4 | 81 | -- | -- |
| 70.35 | 0.393 | 11.2 | -0.809 | 0.514 | -- | 0.427 | -- | -0.0909 | 17.3 | -- | -- | -- | -- |
| 70.69 | 0.394 | 11.2 | -0.808 | 0.517 | -- | -- | -- | -0.0886 | 16.9 | -- | -- | -- | -- |
| 70.82 | 0.392 | 11.2 | -1.06 | -- | -0.72 | -- | -- | -0.215 | -- | 19.67 | 242 | -- | -- |
| 84.6 | 0.428 | 11.2 | -- | 0.49 | -0.303 | -- | -- | -0.0444 | 17.1 | 20.2 | 180 | -- | -- |
| 84.75 | 0.43 | 11.2 | -0.827 | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
| 87.91 | 0.439 | 11.2 | -- | 0.531 | -- | -- | -- | 0.00145 | 16.9 | -- | -- | -- | -- |
| 96.73 | 0.458 | 11.2 | -- | -- | -0.402 | -- | -- | -0.0679 | -- | 20.16 | 180 | -- | -- |
| 102.79 | 0.473 | 11.1 | -- | -- | -- | -- | -- | -0.0101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.04 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 13 |
| 4 | 58.12 | temperature | 20 | 90 | < th | dose independent | sin | 10 | NA |
| 9 | 58.32 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 16 |
| 12 | 58.34 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 15 | 58.36 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 19 |
| 16 | 58.39 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 17 |
| 18 | 58.40 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 47 | 58.61 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 23 |
| 55 | 58.72 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 10 |
| 79 | 58.92 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 14 |
| 141 | 59.25 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 6 |
| 193 | 59.50 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 6 |
| 241 | 59.68 | temperature | 20 | 270 | > th | dose independent | sin | 15 | NA |
| 291 | 59.79 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 22 |
| 308 | 59.84 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 22 |
| 421 | 60.16 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 17 |
| 445 | 60.22 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 23 |
| 447 | 60.23 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 8 |
| 466 | 60.28 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 21 |
| 483 | 60.33 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 19 |
| 484 | 60.34 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 494 | 60.38 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 18 |
| 511 | 60.42 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 19 |
| 542 | 60.52 | temperature | 20 | 90 | > th | dose independent | sin | 8 | NA |
| 578 | 60.61 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 583 | 60.63 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 615 | 60.70 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 23 |
| 616 | 60.70 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 618 | 60.71 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 23 |
| 671 | 60.84 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 2 |
| 683 | 60.86 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 692 | 60.88 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |
| 693 | 60.89 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 695 | 60.89 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 700 | 60.90 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 704 | 60.92 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 709 | 60.93 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 12 |
| 738 | 61.00 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 23 |
| 745 | 61.02 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 746 | 61.02 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 766 | 61.07 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 778 | 61.11 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 786 | 61.11 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 787 | 61.11 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 789 | 61.12 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 2 |
| 839 | 61.21 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 956 | 61.58 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 23 |
| 961 | 61.59 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 23 |
| 992 | 61.65 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |